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12 protocols using lumitrac 200

1

Quantitative PrP-Aβ Oligomer Binding Assay

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Human PrP was diluted to 1 μm in coating buffer (10 mm sodium carbonate, pH 9.6), incubated overnight in medium binding 96-well white plates (LUMITRAC 200, Greiner Bio-One), and blocked for 1 h with Superblock (Pierce, Cramlington, UK). For direct binding experiments, anti-PrP antibodies ICSM18 and ICSM35 or biotinylated Aβ oligomers were added in PBS and incubated for 15 min. After washing, dissociation-enhanced lanthanide fluorescent immunoassay (DELFIA) Eu-N1 anti-mouse antibody or DELFIA Eu-N1 streptavidin (PerkinElmer) was added and incubated for 30 min prior to the addition of DELFIA enhancement solution (PerkinElmer). For inhibition experiments, compounds were added in PBS supplemented with 1% (v/v) DMSO, 0.05% (v/v) Tween 20. After 30 min, 100 nm biotinylated Aβ oligomer was added. Plates were incubated for a further 15 min with gentle rocking prior to washing and detection with DELFIA Eu-N1 streptavidin. Following the addition of DELFIA enhancement solution, plates were incubated for 1 h at room temperature, and time-resolved fluorescence intensity was measured with an EnVision plate reader with excitation at 320 nm, and with emission being measured at 615 nm with a 160-μs delay.
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2

Quantifying Luciferase Assay Protocols

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Supernatant from each sample was collected and immediately used in the luciferase assay. Luciferase presence in the supernatant was quantified by kit (QUANTI-luc, InvivoGen, catalog number rep-qlc1). Each sample was tested in triplicate in white 96-well plates with clear bottoms (LUMITRAC 200, Greiner Bio-One, Monroe, NC) with 5 times of volume to the supernatant sample. For each sample in triplicate the arithmetic average was reported. Fold induction is calculated as previously reported [6 (link)].
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3

Luminol-based Assay for Elicitor-induced ROS

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Ninety-six leaf disks from S. lycopersicum or S. cheesemaniae were cut using a cork borer with a diameter of 4 mm. One disk was placed adaxial side up into each well of a 96-well plate (Lumitrac 200; Greiner Bio-One, Monroe, NC, USA) and incubated in water overnight (ambient room temperature and light).
Controls (untreated, methanol) were represented with 16 disks per plate, treatments with elicitor and elicitor plus methanol were represented by 32 disks per plate each. Immediately before treatment, the water was removed and the wells were filled with an aqueous solution containing 34 μg/mL luminol (Sigma–Aldrich) and 20 μg/mL horseradish peroxidase (MP Biomedicals, Santa Ana, CA, USA) each, plus 10 nM flg22, 3% methanol, flg22 + methanol, or water (untreated). Immediately following treatment, chemiluminescence was measured for 60 min, with readings taken every 64 s, using a Synergy HT Multi-Mode Microplate Reader (BioTek, Winooski, VT, USA) in Kinetic Read Mode, set to read endpoint luminescence in relative luminescence units (RLU). Data were collected using Gen5 Data Analysis Software (BioTek).
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4

Luciferase-based Cytotoxicity Assay in U87 Cells

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U87 cells (5000 cells/well) were seeded 24 h before experiment into 96-well plates. Before PBN incubation, the cell growth medium was replaced by 70 µL of fresh pre-warmed serum-free DMEM. Afterwards, 30 µL of the PBN solutions were added directly to the medium recovering the cells and incubated 1.5 h at 37 °C. Finally, 100 µL fresh DMEM supplemented with 20% FBS were added to the cells (10% FBS at final concentration) and the cells were incubated for further 36 h. The medium covering the cells was then carefully removed and 50 µL of 0.5 X Passive Lysis Buffer (PLB; Promega) were added for 30 min cell lysis at 4 °C. After a centrifugation step (10 min, 1,800 rpm, 4 °C), 10 µL of each cell lysate supernatant were transferred into a white 96-well plate (Greiner Lumitrac™ 200). Luciferase activity was quantified using a plate-reading luminometer (POLARstar Omega, BMG Labtech) and half-diluted dual luciferase assay reagents as described by the manufacturer (Promega). The results were expressed as percentage of relative light units (RLU) for each luciferase, normalized first to non-treated cells (%FLuc and %NLuc) and then to the value of %NLuc to obtain the relative Luc activity (%FLuc/%NLuc).
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5

Quantifying ROS response in N. benthamiana

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The plasmid was transferred into the A. tumefaciens GV3101 strain and injected into N. benthamiana leaves (grown in a greenhouse for two and a half weeks). After 48 h of injection, the injected N. benthamiana leaves were made into discs with a hole punch (diameter, 4 mm) and put into 96 empty plates (Lumitrac 200, Greiner, no.655075). The pieces were placed in each well individually, and 200 μL ddH2O was added. Four replicates were taken for each sample. On the next day, water was replaced with a mock solution containing 34 mg l−1 (w/v) luminol (Sigma-Aldrich, Shanghai, China) and 20 mg l−1 (w/v) horseradish peroxidase (Sigma-Aldrich), and a ROS induced solution containing 34 mg l−1 (w/v) luminol (Sigma-Aldrich), 20 mg l−1 (w/v) horseradish peroxidase (Sigma-Aldrich) and 100 nM flg22. The luminescence was detected for 1 h with a signal integration time of 2 min using SpectraMax L microplate reader (Molecular Devices, Sunnyvale, CA, USA).
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6

Optogenetic Modulation of Secreted Luciferase

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5·104 HeLa cells per well were seeded in two separate 24-well plates and incubated in the absence of light for 24 h at 37°C and 5% CO2. After 24 h, medium was replaced by OptiMEM, and cells were co-transfected with 450 ng pmCherry-PAL and 50 ng pMetLuc reporter with 2 μL Lipofectamine 2000 (Thermo Fisher Scientific, Darmstadt, Germany) according to manufacturer’s instructions. Transfected cells were incubated for 4 h at 37ºC and 5% CO2 in the presence of blue light (465 nm, 106 μW cm-2, 30 s pulses) or in darkness. The transfection mix was replaced by DMEM with 10% FCS, and plates were incubated at 18 h under the specified light regime. For the assay, 5 μL luciferase substrate dissolved in buffer according to manufacturer’s instructions (Ready-To-Glow Secreted Luciferase, Takara Clontech, Kyoto, Japan) were added to wells of a white 96-well plate (lumitrac200, Greiner). 50 μL supernatant of the cell culture was added, and the reaction was incubated for 25 min. The luminescence signal was measured using an Enspire plate reader (PerkinElmer, Waltham, Massachusetts, USA) with an integration time of 5 seconds.
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7

Luminescence-based Immune Response Assay

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Tomato plants (4-week-old) were exposed to either WL or WL+FR for 4 d. On Day 5, leaf discs (Ø 0.4 cm) originating from the third leaf of each plant were floated on deionized water for approximately 8 h in either WL or WL+FR corresponding to the light treatment conditions at room temperature without shaking. Each leaf disc was placed in each well of a white flat-bottomed 96-well plate (Greiner LUMITRAC 200) onto 180 µL of deionized water mixed with 20 µL of 10X reaction mix (200-µM Luminol L-012 and 10-µg mL−1 horseradish peroxidase) with a final concentration of 20-µM Luminol and 1 µg mL−1 of peroxidase. The luminescence was quantified by using a GloMax luminometer (Promega). The background noise was measured for 15 min prior to adding 1-µM flg22 or 1% chitosan (w/v) (final concentrations) on the leaf discs. The luminescence was measured for ∼1 h by recording 34 cycles of 100 s (Albert and Fürst, 2017 (link)).
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8

Optogenetic Modulation of Secreted Luciferase

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5·104 HeLa cells per well were seeded in two separate 24-well plates and incubated in the absence of light for 24 h at 37°C and 5% CO2. After 24 h, medium was replaced by OptiMEM, and cells were co-transfected with 450 ng pmCherry-PAL and 50 ng pMetLuc reporter with 2 μL Lipofectamine 2000 (Thermo Fisher Scientific, Darmstadt, Germany) according to manufacturer’s instructions. Transfected cells were incubated for 4 h at 37ºC and 5% CO2 in the presence of blue light (465 nm, 106 μW cm-2, 30 s pulses) or in darkness. The transfection mix was replaced by DMEM with 10% FCS, and plates were incubated at 18 h under the specified light regime. For the assay, 5 μL luciferase substrate dissolved in buffer according to manufacturer’s instructions (Ready-To-Glow Secreted Luciferase, Takara Clontech, Kyoto, Japan) were added to wells of a white 96-well plate (lumitrac200, Greiner). 50 μL supernatant of the cell culture was added, and the reaction was incubated for 25 min. The luminescence signal was measured using an Enspire plate reader (PerkinElmer, Waltham, Massachusetts, USA) with an integration time of 5 seconds.
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9

Measurement of Apoplastic ROS in Tomato Leaves

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Apoplastic ROS were measured using GloMax-Multi + Detection system (Promega, United States) using a protocol modified from an earlier described protocol (Bisceglia et al., 2015 (link)). Briefly, biopsy punches (4 mm diameter, Kai Medical, Japan) were used to collect four leaf disks per plant from the mesophyll of the second true leaf. These samples were collected from six 4-week-old tomato plants that had not been previously sprayed. The collected leaf disks were placed in a Petri dish containing distilled water for 2 h in the dark. Every 30 min, the distilled water was replaced to remove cellular damage-related compounds. Leaf disks were placed in 96-well microplates (Lumitrac 200, Greiner Bio-One, United States) with 100 μl MS medium (4.43 g/l MS pH 5.7, Duchefa Biochemie, Netherlands) and 50 μl luminol/peroxidase solution containing 9 μg/ml luminol and 4 μg/ml peroxidase (Sigma-Aldrich, United States). After 4 h incubation at 24°C, 50 μl of 62.5 mg/l COS-OGA for elicited leaf disks or 50 μl 0.1% Tween 20 for control leaf disks were added. The chemiluminescence was measured directly for 90 min with a signal integration time of 1 s. Each curve was integrated and expressed in relative chemiluminescence units. The average value of chemiluminescence per treatment was expressed in percentage of the control (n = 12).
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10

High-Throughput Serum Screening Protocol

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To facilitate high-throughput screening of serum, a semi-automated approach was developed and simulated using the UCSF Antibiome Center robotics platform40 . Serum in 96-well plates is first diluted 12.5-fold, and 10 μl is dispensed into four individual flat-bottom white plates (Greiner Lumitrac 200, 384-well plates) using a Biomek FXP Automated Workstation (Beckmann Coulter). Serum-containing assay plates are then transferred to a robotics protocol with dispensing of biosensor and substrate followed by luminescence reading. Although one iteration of 96 samples takes 40 min, each additional iteration takes an additional 3.5 min, limited by luminescence reading (1 s per well plus plate transfer). As such, it is estimated that 40 plates (3,840 assays) could be run in 3 h. The robotics run was developed and simulated using Thermo Momentum software (v5.0.6).
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