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6 protocols using 2 2 aminoethoxy ethanol

1

Synthesis of Immobilized Kinase Inhibitors

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For synthesis of KAM-derivatized resin, packed NHS-activated sepharose 4 fast flow resin (volume = 2 mL; GE Healthcare) was washed with anhydrous DMSO (3 × 10 mL). To the washed NHS-activated sepharose resin was added 0.5 mM KAM in anhydrous DMSO (8 mL; 2 μmol compound/mL of resin), followed by the addition of triethylamine (30 μL). The reaction mixture was vortexed to mix and pelleted by centrifugation (100 x g, 2 min). An aliquot of the supernatant (50 μL) was saved for LC/MS analysis. The reaction mixture was allowed incubate overnight at room temp with end-over-end rotating agitation. On the following day, the reaction mixture was pelleted by centrifugation (100 x g, 2 min). An aliquot of the supernatant (50 μL) was saved for LC/MS analysis. Completion of coupling was inferred by loss of starting material following LC/MS analysis. 2-(2-Aminoethoxy)ethanol (100 μL; Sigma-Aldrich) was added to the reaction mixture, vortexed, and incubate overnight at room temp with end-over-end agitation. The KAM-derivatized resin was then washed with anhydrous DMSO (3 × 10 mL) and 95% EtOH (3 × 10 mL).
For synthesis of imatinib-derivatized resin, a similar protocol was followed as described above except that final concentration of compound on the bead was 0.25 μmol compound/mL.
For synthesis of dasatinib-derivatized resin, the protocol for the KAM-derivatized resin was followed.
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2

Enzyme-Linked Immunosorbent Assay (ELISA) Protocol

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Horseradish peroxidase (HRP) (EC 1.11.1.7, from Armoracia rusticana, 500 U·mg−1), tetrachloroauric acid trihydrate, sodium salt of ABTS, sodium citrate, N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (EDC), pentafluorophenol (PFP), 2-(2-aminoethoxy) ethanol (AEE), dimethylformamide (DMF), N,N-diisopropylethylamine (DIPEA), 16-mercaptohexadecanoic acid (MHDA), methylamine (MA), dimethylamine (DMA), trimethylamine (TMA), NaCl, KH2PO4, Na2HPO4, chloroform, and Butvar solution B-98 were purchased from Sigma-Aldrich (ALSI Ltd., Kiev, Ukraine). The cathodic electrodeposition paint “GY 83–0270 0005” was from BASF Farben und Lacke (Munster, Germany). All buffers and standard solutions were prepared using the water purified by the Milli-Q system (Millipore).
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3

Synthesis of Glycosylated Iron Oxide Nanoparticles

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FeCl2·4H2O, FeCl3·6H2O, malonic acid, 2-(7-Aza-1H-benzotriazole-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate (HATU), N,N-diisopropylethylamine (DIEA), and dimethylformamide (DMF) were from Bomaijie Inc. (Beijing, China). Glucose, glutamine, ammonium hydroxide (28~30 wt%), tetraethylorthosilicate (TEOS), (3-aminopropyl) triethoxysilane (APS), 2-(2-aminoethoxy) ethanol, 4-(trans-2-carboxyvinyl) phenylboronic acid, and ovalbumin were purchased from Sigma-Aldrich (St. Louis, MO, USA). Water was purified on a Milli-Q system (Millipore, Milford, MA, USA). PNGase F was purchased from New England Lab. Human milk samples were provided by a healthy mother, attending the First Affiliated Hospital of Medical College, Peking University, China.
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4

Synthesis of Dopamine-Functionalized PEG Copolymers

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Poly(ethylene glycol) methyl ether acrylate (average Mn = 480) (APEG) and 2-(2-aminoethoxy) ethanol (AEE) were purchased from Sigma-Aldrich. Dopamine methacrylamide (DMA) and dibenzyl trithiocarbonate (DTC) were synthesized, as previously reported.28,29 (link) Organic solvents were obtained from SAMCHUN CHEMICALS. Azobisisobutyronitrile (AIBN) was obtained from Junsei. PEG (2 kDa)-derivatized phosphine oxide (PO-PEG) was synthesized following the literature.30 (link)
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5

Biomolecular Conjugation Protocol

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Gold(III) chloride trihydrate, trisodium citrate dihydrate, N-hydroxysuccinimide (NHS), 1- (3-(dimethylamino)propyl)-3-ethylcarbodiimide hydrochloride (EDC), 2-(2-aminoethoxy) ethanol (AEE), Tween 20, 16- mercaptohexadecanoic acid (16-MHDA), 3,3,5,5-tetramethylbenzidine (TMB), horseradish peroxidase (HRP, Type VI), cholera toxin from Vibrio cholerae (CT), anticholera toxin antibody from rabbit (whole antiserum), and Protein A from Staphylococcus aureus were from Sigma-Aldrich (St. Louis, MO). Streptavidin and (+)-biotinyl-3,6,9-trioxaundecanediamine (BA) were from Thermo Scientific (Rockford, IL). 1-Oleoyl-2-palmitoyl-sn-glycero-3-phosphocholine (POPC) and 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-(biotinyl) sodium salt (biotin-PE) were from Avanti Polar Lipids (Alabaster, AL). Monosialoganglioside receptor GM1 was from Matreya (Pleasant Gap, PA). Functionalized oligonucleotides were obtained from Integrated DNA Technologies (Coralville, IA), and their sequences are provided in Table 1. Detailed compositions of all buffers used (1× PBS, PBT, PCB, and MES) may be found in the Supporting Information. Nanopure water (≥18 MΩ·cm), purified through a Barnstead E-Pure filtration system (Thermo Scientific, Rockford, IL), was used for all reagent preparations.
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6

Asymmetric PBI Derivative Synthesis and Characterization

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The chemical structure of the amphiphilic and asymmetric PBI derivative, (2-(2-methoxyethoxy)ethyl)-9-(tridecan-7-yl) perylene bisimide derivative, (C 42 H 48 N 2 O 6 ; FW: 676.8403) is reported in Fig. 1 (General Synthetic Scheme and Experimental Procedure are described in Supplementary Information). 1-Hexylheptylamine was synthesized following a reported method [39, 40] .
Uric acid (UA), chloroform (HPLC grade, !99.9%), hexamethyldisilazane (purity ! 99%), quartz slides (solid substrates), Roswell Park Memorial Institute (RPMI)-1640, trypsin, L-glutamine, penicillin-streptomycin (pen-strep), Fetal Bovine Serum (FBS), MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenol tetrazolium bromide), dimethyl formamide (DMF), 1,8-diazabicycloundec-7-ene, 1butanol, 1-butyl bromide, dichloromethane, sodium sulfate, HCl, CH 3 CN, methanol, glacial acetic acid, sulfUric acid zinc acetate dihydrate and 2-(2-Aminoethoxy)ethanol were purchased from Sigma-Aldrich. D 2 O (99.96% of D) was purchased from VWR Chemicals. The water used in this work was purified from a Millipore Milli-Q system (18.2 MX cm).
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