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30 protocols using pe conjugated streptavidin

1

Proliferation and Lectin Staining Protocol

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For proliferation studies, cells were labelled with 10 μM proliferation dye eFlour 670 (eBiosciences, #65-0840-90) for 10 min on ice. Labelling was stopped by adding 4-5 volumes of complete culture medium for 5 min on ice. Cells were then subjected to flow cytometry analysis (day0) or maintained in culture for additional 5 days prior to analysis by Flow Cytometry. For lectin staining, Peanut Agglutinin (PNA, #B-1075), Sambucus Nigra Lectin (SNA, #B-1305), Aleuria Aurantia Lectin (AAL, #B-1395) and Maackia Amurensis Lectin II (MAA, # B-1265-1), all from vector laboratories, were used. Cells were blocked in carbon-free blocking buffer (vector laboratories, #SP-5040) for 20 min on ice, and then incubated with biotinylated lectins diluted in PBS containing 5% carbon-free blocking buffer. Lectins were then detected with FITC-conjugated streptavidin (Biolegend, #405201), Alexa Flour 647-conjugated streptavidin (Biolegend, #2068269) or PE-conjugated Streptavidin (Biolegend, #410504) in PBS for 20 min at 4°C. To differentiate between live and dead cells, all samples were stained with DAPI (Sigma, #32670, dilution 1:1000) prior to data acquisition. Data were acquired using an LSR II flow cytometer (BD) and analysed using FlowJo version 10.8.0.
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2

Selective Binding of DVD1 and DVD2 to HER2+ Cells

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Example 11

DVD1 and DVD2 were incubated with SKBR3 (HER2+) or MDA-MB-468 (HER2−) for 30 min on ice then stained with AlexaFluor 647 conjugated F(ab′)2 goat anti-human (Jackson ImmunoResearch). Results are provided in FIG. 22. The results demonstrate that DVD1 and DVD2 compositions selectively bound to SKBR3 (HER+) cells.

To examine non-specific binding of biotin β-lactam, DVD1 and DVD2 were incubated with 3 eq of biotin β-lactam (referred to as “Compound” in the figures) at room temperature for 2 hours, then incubated with SKBR3 (HER2+) or MDA-MB-468 (HER2-) for 30 min on ice and stained with PE conjugated Streptavidin (BioLegend). Results are provided in FIG. 23. The results demonstrate that DVD1 and DVD2 compositions selectively bound to SKBR3 (HER+) cells, whereas the biotin β-lactam compound did not bind to the HER2+ cells in a non-specific manner.

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3

Murine Splenocyte Immune Profiling

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Mouse splenocytes were cultured in a complete RPMI-1640 medium (GenDEPOT, Katy, TX, USA) supplemented with fetal bovine serum (10%, Hyclone, South Logan, UT, USA) and 1% penicillin/streptomycin (Welgene, Gyeongsan, Korea). Anti-mouse TCR-β-PE, CD45.1-Percp Cy5.5, CD3-APC Cy7, CD8-FITC, CD44-PE, and IFN-γ-FITC antibodies as well as CFSE cell proliferation tracing dye were purchased from Tonbo Bioscience (San Diego, CA, USA). Anti-mouse TNF-α-PE Cy7, APC-conjugated streptavidin, and PE-conjugated streptavidin were purchased from Biolegend (San Diego, CA, USA). Gp33-41 class I pMHC tetramer was provided by the NIH Tetramer Core Facility (Atlanta, GA, USA).
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4

In vivo Platelet Biotinylation for Lifespan Analysis

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Platelet lifespan was monitored by in vivo biotinylation as previously described24 (link). In brief, 3 mg EZ-link-N-Hydroxysulfosuccinimide-Biotin (EZ-NHS-Biotin, Pierce) was intravenously injected into each mouse. Blood samples were obtained at indicated days and incubated with FITC-anti-CD41 and phycoerythrin (PE)-conjugated streptavidin (Biolegend), followed by flow cytometric analysis of biotinylated platelets.
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5

Exosome Surface Marker Profiling by Flow Cytometry

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Exosomes were conjugated to aldehyde/sulfate latex beads with a diameter of 4 μm (catalog no. A37304, Invitrogen) in PBS overnight at 4 °C [34 (link)]. The mixture was then subjected to immunostaining and flow cytometric analysis [10 (link)]. The exosome-latex beads or cells were incubated with biotinylated protein L (Piscataway, NJ) to detect surface CAR expression. After incubation, staining was performed for 30 min using PE-conjugated streptavidin (Biolegend, San Diego, CA, USA) and the excess dyes were then washed. The kit (eBioscience) was used for fixation/permeabilization before intracellular staining for 45 min. The assay was carried out using an Attune NxT flow cytometer (Thermo Fisher Scientific) and data were analyzed using FlowJo software (version 10.8). The corresponding IgG antibody was used as an isotype control.
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6

Recombinant MOG Tetramer Production

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Polyethylenimine linear (PEI, CliniSciences, Nanterres, France) treated HEK cells were transfected with a pTT5 plasmid encoding for a histidine and Avi tagged MOG1-125, according to the protocol described in (41 (link)). Transfection efficiency of 21% was determined using a GFP plasmid. After 7 days of culture, supernatants were collected and rhMOG was purified by affinity chromatography using His TrapTM HP columns (Cytivia, Marlborough, MA). rMOG was eluted using an imidazole gradient (Sigma-Aldrich), followed by dialysis against PBS. A single biotin molecule was attached to the AviTag using the biotinylating kit (BirA500 kit, Avidity, Aurora, CO). The single-biotin rMOGm monomer was tetramerized at a ratio of 4mol of biotin rMOGm monomer to 1 mol of FITC or PE-conjugated streptavidin (Biolegend, San Diego, CA). The rMOGm tetramer that we refer to as MOGtet was validated by flow cytometry using splenocytes from IgHMOG mice. Validated MOGtet labelled at least 70% of MOG-specific B cells present among IgHMOG splenocytes.
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7

Quantifying Peptide Binding to HLA-expressing Cells

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HLA-expressing HEK293T cells or 3T3 cells in 24 well plates (about 2 × 105 cells/well) were incubated with biotinylated peptides in 0.3 mL of medium for the indicated time period. Cells were detached from the wells by pipetting in PBS (for HKE293T cells) or 5 mM EDTA/PBS (for 3T3 cells), washed with 0.1% BSA/PBS, and suspended in 50 µL of the same medium. Bound peptides on the cells were probed with PE-conjugated streptavidin (×200, BioLegend) for 30 min, and were analysed by FACS (Verse, BD Biosciences). For detection of cell-surface HLA, cell suspensions in 0.1% BSA/PBS prepared as described above were incubated with APC-labelled anti-HLA-DR antibody (×100, BioLegend 307629) and analysed by FACS.
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8

Surface GM2 Detection in CAR-T Cells

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Unconjugated humanized anti‐GM2 mAb (Creative Biolabs) and secondary APC‐conjugated anti‐human IgG Fc mAb (clone HP6017; BioLegend) were used to detect the surface GM2. The CAR‐expressing T cells were detected with APC‐Cy7‐conjugated anti‐CD3 mAb (clone HIT3a; BioLegend), PerCPCy5.5‐conjugated anti‐CD4 mAb (clone OKT4; BioLegend), APC‐conjugated anti‐human CD8 (clone HIT8a; BioLegend), and/or biotinylated anti‐idiotype Ab against anti‐GM2 CAR (Cell Engineering Corporation), followed by PE‐conjugated streptavidin (BioLegend). Zombie Yellow viability dye (BioLegend) and PE‐conjugated anti‐CD45 mAb (clone HI30; BioLegend) were used to detect viable immune and non‐immune cells after in vitro co‐culture assay. Human TruStain FcX (BioLegend) was used to block nonspecific binding of mAb with Fcγ receptors. Flow cytometric data were acquired and analyzed as previously reported.10
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9

CD70-CD27 Binding Inhibition Assay

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Example 3

Fifty μl of CHO cells expressing human CD70, at a density of 5×105/ml, were incubated with 50 μl serially diluted IMM40H, cusatuzumab and hIgG-Fc (3-fold dilution, starting at 900 nM), respectively. The resultant mixtures were added to a 96-well plate containing 50 μl 2.5 μg/ml biotin-CD27(ECD)-Fc (SEQ ID NO: 22, amino acid residues 1 to 172 coding for CD27 extracellular domain) in each well, and the plate was incubated at 4° C. for 45 min. The cells were washed with PBS and incubated with 100 μl PE-conjugated streptavidin (Cat #554061, Biolegend) for 45 min. Cells were washed twice, re-suspended in 200 μl PBS, and subject to FACS analysis.

As can be seen from FIG. 3, IMM40H blocked the binding of CD27(ECD)-Fc to CD70+ CD47 CHO cells at an activity similar to that of cusatuzumab.

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10

Comprehensive Immunologic Assay Protocol

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Antibody were purchased from BioLegend, including FITC anti-human HLA-A2 antibody (Cat#343303), PE anti-human HLA-A2 antibody (Cat#343305), anti-human CD28 antibodies (Cat#302901), APC anti-human-CD69 (Cat#310909), APC anti-human CD8 (Cat#344721), PerCP anti-human IFN-γ (Cat#502524), and FITC anti-human granzyme B (Cat#515403). Flex-T monomer (Cat#280003) and PE conjugated streptavidin (Cat#405203) were purchased from BioLegend. Ficoll-Paque PLUS (Cat#17144003) was from GE and DMSO (Cat#D2650) was from Sigma-Aldrich. IMDM (Cat#SH30228.01) and penicillin-streptomycin (Cat#SV30010) were from HyClone, and FBS (Cat#S711-001S) was purchased from LONSERA. PBS (Cat#C10010500BT) was from Gibco (Waltham, Massachusetts, USA). D-biotin (Cat#2110450) was purchased from Invitrogen (Waltham, Massachusetts, USA), and Mitomycin C (Cat#50-07-7) was from Sinochem Holdings (Beijing, China). CFSE (Cat#T6802) was from Targetmol (Boston, Massachusetts, USA). EasySep Human CD8+ T Cell Isolation Kit (Cat#17953) was from Stem Cell Technologies (Vancouver, British Columbia, Canada), and IL-2 (recombinant human interleukin-2(125Ala) injection) was from SL PHARM (Beijing, China). Leuko act cktl with GolgiPlug (Cat#550583) was purchased from BD.
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