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10 protocols using immobilon polyvinylidene difluoride transfer membranes

1

Western Blot Analysis of ER Stress Proteins

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Thirty micrograms of different protein fractions from rat tissues were subjected to 10% SDS-polyacrylamide gel electrophoresis. Proteins were transferred to Immobilon polyvinylidene difluoride transfer membranes (Millipore, Burlington, MA, USA) and blocked for 1 h at room temperature with 5% non-fat milk solution in 0.1% Tween-20-Tris-buffered saline (TBS). Membranes were then incubated overnight with the primary antibody in 0.1% Tween-20-TBS with 5% bovine serum albumin (BSA) at 4 °C. Detection was achieved using the enhanced chemiluminescence (ECL) kit for horseradish peroxidase (HRP) (Amersham GE Healthcare Europe GmbH, Barcelona, Spain). To confirm the uniformity of protein loading, the blots were incubated with β-actin or β-tubulin antibody (Sigma-Aldrich, Saint Louis, MO, USA) as a control. The size of the detected proteins was estimated using protein molecular-mass standards (Invitrogen, Life Technologies). Primary antibodies for phosphor- and total-IRE1, ATF6α, phosphor- and total-PERK, and XBP1s proteins were obtained from Santa Cruz Biotechnologies (Dallas, TX, USA) and AbCam (Cambridge, UK) as described previously [32 (link)].
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2

Western Blot Analysis of Rat Tissue Proteins

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30 μg of different protein fractions from rat tissues was subjected to SDS-polyacrylamide gel electrophoresis. Proteins were then transferred to Immobilon polyvinylidene difluoride transfer membranes (Millipore, Billerica, MA, USA), blocked for 1 h at room temperature with 5% non-fat milk solution in 0.1% Tween-20-Tris-buffered saline (TBS), and incubated as described previously15 (link). Detection was performed using the ECL chemiluminescence kit for HRP (Amersham GE Healthcare Europe GmbH, Barcelona, Spain). To confirm the uniformity of protein loading, blots were incubated with β-tubulin or β-actin antibodies (Sigma-Aldrich, St. Louis, MO, USA) as a control. Primary antibodies for phospho-and total AKT, phospho- and total AS160, phospho-ERK, GLUT4, phospho-PKA and phospho-TSC-2 were supplied by Cell Signaling (Danvers, MA, USA), those for 14-3-3, ChREBP, phospho-and total FoxO1, IRS-1, IRS-2, MKP-3 and phospho-SGK-1 were obtained from Santa Cruz Biotechnologies (Dallas, TX, USA), and antibody against phospho-mTOR was from Millipore (Billerica, MA, USA).
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3

Western Blot Analysis of Protein Extracts

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Western blots were performed using three samples per group, each sample was pooled from two animals. A total of 20–30 μg of protein extracts were subjected to SDS-polyacrylamide gel electrophoresis. Proteins were then transferred onto Immobilon polyvinylidene difluoride transfer membranes (Millipore, Billerica, MA, USA), and blocked for 1 h at room temperature, with 5% non-fat milk solution in Tris-buffered saline (TBS) containing 0.1% Tween-20. Membranes were then incubated with specific primary antibodies. Detection was performed using the Immobilion Western HRP substrate Peroxide Solution® (Millipore, Billerica, MA, USA). To confirm the uniformity of protein loading, blots were incubated with anti-β-actin or anti-β-tubulin antibody (Sigma–Aldrich, St. Louis, MO, USA) as a control for total protein extracts, and with anti-TBP antibody (AbCam, Cambridge, UK) for nuclear protein extracts.
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4

Quantitative Western Blot Analysis of Liver Proteins

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Liver samples were homogenized in lysis buffer using a Potter-Elvehjem homogenizer, and total protein and nuclear extracts were prepared as described previously [16 (link)]. Protein content was determined by the Bradford assay [31 (link)]. Western blots were performed using four samples per group, each sample pooled from two animals. A total of 20–30 µg of protein extracts was subjected to SDS-polyacrylamide gel electrophoresis. Proteins were then transferred onto Immobilon polyvinylidene difluoride transfer membranes (Millipore, Billerica, MA, USA) and blocked for 1 h at room temperature with a 5% non-fat milk solution in Tris-buffered saline (TBS) containing 0.1% Tween-20. Membranes were then incubated with specific primary antibodies (see the list of antibodies used in the Supplementary Material, Table S2). Detection was performed using the Immobilion Western HRP substrate Peroxide Solution® (Millipore, Billerica, MA, USA). To confirm the uniformity of protein loading, blots were incubated with antivinculin antibody (Santa Cruz Biotech, Dallas, TX, USA) as a control for total protein extracts, and with anti-TBP antibody (AbCam, Cambridge, UK) as a control for nuclear protein extracts.
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5

Protein Extraction and Western Blot Analysis

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Total protein extracts from liver were obtained by the Helenius method [22 (link)], and protein concentrations were determined by the Bradford method [23 (link)]. Thirty micrograms of protein extracts were subjected to SDS-polyacrylamide gel electrophoresis. The protein fractions were then transferred to Immobilon polyvinylidene difluoride transfer membranes (Millipore, Billerica, MA, USA), blocked for 1 h at room temperature with 5% non-fat milk solution in 0.1% Tween-20-Tris-Buffered Saline (TBST), and incubated as described previously [24 (link)]. Detection was performed using the ECL chemiluminescence kit for HRP (Amersham GE Healthcare Europe GmbH, Barcelona, Spain). To confirm the uniformity of protein loading, blots were incubated with β-tubulin antibody (Sigma-Aldrich, St. Louis, MO, USA) as a control. Primary antibodies for phosphorylated and total Akt and IκBα were supplied by Cell Signaling Technology (Danvers, MA, USA) and those for IRS-2 and phosphorylated and total IRβ were obtained from Santa Cruz Biotechnologies (Dallas, TX, USA). The antibody against phosphorylated IRS-2 was from Abcam (Cambridge, UK).
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6

Rat Liver Protein Analysis by Western Blot

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Thirty micrograms of total protein from rat livers were obtained and subjected to 10% SDS-polyacrylamide gel electrophoresis basically as described previously (30 (link)). Proteins were then transferred to Immobilon polyvinylidene difluoride transfer membranes (Millipore, Billerica, MA, USA), blocked for 1 h at room temperature with a 5% non-fat milk solution in 0.1% Tween-20-Tris-buffered saline (TBS), and incubated overnight at 4°C with the primary antibody raised against V-akt murine thymoma viral oncogene homolog-2 (AKT), pAKT, B-cell lymphoma 2 (BCL2) (dilution 1:1,000) (#9272, #4060, #3869, respectively; Cell Signalling, Leiden, Netherlands) and anti-glutathione s-transferase Pi1 (GSTP1) (dilution 1:500; NBP2-16756 from Novus Biologicals LLC., CO, USA). Detection was performed with the Thermo Scientific™ Pierce™ ECL Western blotting Substrate (Ref. no. 10455145, Thermo Scientific™, Madrid, Spain). To confirm the uniformity of protein loading, the blots were incubated with the β-ACTIN antibody (Sigma-Aldrich, St. Louis, MO) as a control.
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7

Rat Liver Protein Profiling by SDS-PAGE

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Thirty micrograms of different protein fractions from rat livers were subjected to 10% SDS-polyacrylamide gel electrophoresis, as described previously [11] . Briefly, proteins were transferred to Immobilon polyvinylidene difluoride transfer membranes (Millipore, Bedford, MA, USA) and blocked for 1 hr at room temperature with 5% non-fat milk solution in TBS-0.1% Tween-20. Detection was achieved using the enhanced chemiluminescence (ECL) kit for horseradish peroxidase (HRP) (Amersham Biosciences). To confirm the uniformity of protein loading, the blots were stained with -actin (Sigma-Aldrich) as a control. The size of detected proteins was estimated using protein molecular-mass standards (Invitrogen, Life Technologies). All antibodies were obtained from Santa Cruz Technologies, except those for insulin receptor substrate-2 (IRS-2) and phospho-protein kinase B (p-Akt), which were obtained from Cell Signaling (Danvers, MA, USA).
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8

Western Blot Analysis of Nrf2 and HO-1

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Thirty micrograms of different protein fractions from rat tissues were subjected to 10% SDS-polyacrylamide gel electrophoresis. Proteins were transferred to Immobilon polyvinylidene difluoride transfer membranes (Millipore, Billerica, MA, USA) and blocked for 1 h at room temperature with 5% non-fat milk solution in 0.1% Tween-20-Tris-buffered saline (TBS). Membranes were then incubated overnight with the primary antibody raised against Nrf2 or HO-1, in 0.1% Tween-20-TBS with 5% bovine serum albumin (BSA) at 4ºC.
Detection was achieved using the enhanced chemiluminescence (ECL) kit for horseradish peroxidase (HRP) (Amersham GE Healthcare Europe GmbH, Barcelona, Spain). To confirm the uniformity of protein loading, the blots were incubated with β-actin antibody (Sigma-Aldrich, St. Louis, MO, USA) as a control. The size of detected proteins was estimated using protein molecular-mass standards (Invitrogen, Life Technologies). Primary antibodies for HO-1 and Nrf2 were obtained from Santa Cruz Biotechnologies (Dallas, TX, USA).
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9

Western Blot Protein Analysis in Rat Liver

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Thirty micrograms of different protein fractions from rat livers were subjected to 10% 10 SDS-polyacrylamide gel electrophoresis, as described previously [5] . Briefly, proteins were 11 transferred to Immobilon polyvinylidene difluoride transfer membranes (Millipore, Bedford, 12 MA, USA) and blocked for 1 hr at room temperature with 5% non-fat milk solution in TBS-13 0.1% Tween-20. Detection was achieved using the enhanced chemiluminescence (ECL) kit 14 for horseradish peroxidase (HRP) (Amersham Biosciences). To confirm the uniformity of 15 protein loading, the blots were stained with -actin (Sigma-Aldrich) as a control. The size of 16 detected proteins was estimated using protein molecular-mass standards (Invitrogen, Life 17 Technologies). All antibodies were obtained from Santa Cruz Technologies, except that for 18 insulin receptor substrate-2 (IRS-2) which was obtained from Cell Signaling (Danvers, MA, 19 USA). 20 21
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10

Protein Expression Analysis in Rat Brain

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Different protein extracts (20-30 µg) from rat frontal cortex and hippocampus were subjected to SDS-polyacrylamide gel electrophoresis. Proteins were then transferred to Immobilon polyvinylidene difluoride Transfer Membranes (Millipore, Billerica, MA, USA), blocked for 1 h at room temperature with 5% non-fat milk solution in Tris-buffered saline (TBS) with 0.1% Tween-20, and incubated as described previously [21] (link). Detection was performed using the ECL chemiluminescence kit for HRP (Amersham GE Healthcare Europe GmbH, Barcelona, Spain).
To confirm the uniformity of protein loading, blots were incubated with -actin antibody (Sigma-Aldrich, St. Louis, MO, USA), which was used as the normalization control for Western blot analysis. Primary antibodies for total and phosphorylated Akt, and total and phosphorylated GSK3β were supplied by Cell Signaling (Danvers, MA, USA), and those for Drp1, IDE, Mfn2 and PSD95 were obtained from Abcam (Cambridge, UK). The anti-SYP antibody was obtained from Dako (Agilent Technologies, Santa Clara, CA, USA), Opa1 from BD Biosciences (San Jose, CA, USA), total Tau from Chemicon International (Temecula, CA, USA) and phosphorylated Tau from Invitrogen (Carlsbad, CA, USA).
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