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12 protocols using anti socs1

1

Western Blot Analysis of SOCS1

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Cells were lysed in RIPA buffer with protease inhibitors and phosphatase inhibitors. Protein was loaded onto an SDS-PAGE minigel and transferred onto a PVDF membrane. The blots were probed with anti-SOCS1 (Abcam, MA, USA) or anti-GAPDH (Abcam, MA, USA) antibody followed by the HRP-conjugated secondary antibody. Signals were visualized using ECL Substrates (Millipore). GAPDH served as the loading control.
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2

Western Blot Analysis of SOCS1 Protein

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Total protein of tissues and cells was separated by electrophoresis on 8% polyacrylamide gels and then electrotransferred to polyvinylidene fluoride (PVDF) membranes. After that, the PVDF membranes was incubated with primary anti-SOCS1 (12,000, Abcam, Cambridge, MA, USA) as well as ß-actin (12,000, Abcam, MA, USA) antibody at 4 °C for a night, followed by 2-h incubation with a secondary antibody. Image J software was adopted for quantifying the integrated density of the bands.
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3

EHLJ7 Compound Characterization and Therapeutic Evaluation

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EHLJ7 was synthesized by our institute. The structure of EHLJ7 is showed in Figure 1A. Roswell Park Memorial Institute (RPMI) 1640 Medium and Hyclone™ fetal bovine serum (FBS) were both purchased from GE Healthcare (Waltham, USA). Interleukin-6 (IL-6) was obtained from Proteintech Group, Inc. (Chicago, USA). Sodium butyrate (SB) was purchased from Sigma Aldrich (St. Shanghai, China). Anti-JAK2, anti-p-JAK2, anti-STAT3, anti-p-STAT3, and anti-SOCS1 antibodies were purchased from Abcam, Inc. (Shanghai, China). DSS was obtained from MP Biomedicals (USA). Radio-immunoprecipitation assay (RIPA) lysis buffer was purchased from Sorlarbio Bioscience & Technology CO. INC (Beijing, China). Bicinchoninic Acid (BCA) Protein Assay Kit was purchased from Applygen Technologies Inc (Beijing, China). The ELISA kits for tumor necrosis factor alpha (TNFα) and IL-6 were from R&D Systems, Inc. (Minneapolis, USA). RNAprep pure Cell/Bacteria Kit, FastKing RT Kit, and SuperReal PreMix Plus were purchased from Tiangen Biotech (Beijing, China).
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4

Quantification of Colon Tissue Proteins

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Colon tissues (n = 6) were quickly shredded and mixed with protease inhibitor cocktails, which were randomly selected from every group. The mixture was homogenized by ultrasound on crushed ice and centrifuged at 13000g at 4°C for 10 min; the supernatant was extracted; and the protein concentration was determined by BCA protein assay. Equal amounts of total protein (60 μg) were separated by SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membrane using a semidry transfer slot (Bio-Rad, USA). After blocking with 5% nonfat dried milk for 1 h, the membrane was incubated with proportionally diluted antibodies at 4°C overnight. The antibodies included rabbit anti-GAPDH (1:2,000), anti-BCL-2 (1:2,000), anti-BIM-1 (1:1,000), anti-caspase-3 (1:500), anti-BAX (1:1,000), anti-PP2A (1:1,000), anti-β-casein (1:2,500), anti-caveolin-1 (1:1,000), anti-Pim-1 (1:1,000), anti-JAK1 (1:1,000), anti-JAK3 (1:1,000), anti-PIAS1 (1:2,000), anti-PIAS3 (1:2,000), anti-Socs-1 (1:1,000), anti-P-STAT5 (1:1,000), and anti-STAT5 (1:1,000; Abcam). Then, samples were incubated with a corresponding secondary antibody (Abcam) for 1 h. After washing three times with TBST, the blots were visualized by the Proteogel imaging system (FluorChem M, ProteinSimple, USA) and quantified with the Quantity One System (Bio-Rad).
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5

Detailed Antibody Reagents for Signaling

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The antibodies anti-FABP4 (number ab92501), anti-JAK1 (number ab47435), anti-JAK3 (number ab45141), anti-STAT1 (number ab30645), anti-STAT3 (number ab76315), anti-SOCS1 (number ab9870), anti-SOCS2 (number ab3692), and anti-Rap1a (number ab197673) were purchased from Abcam (Cambridge, MA). Anti-Src (number 2108S), anti-p-Src family (Tyr416 number 6943S), anti-STAT2 (number 72604S), anti-JAK2 (number 3230S), anti-p-JAK2 (Y1007/1008, number 3771S), and anti-p-STAT2 (number 88410S) antibodies were obtained from Cell Signaling Technology (Danvers, MA), while anti-β-actin (number sc-8432) was obtained from Santa Cruz Biotechnology (Santa Cruz, CA).
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6

Quantitative Western Blot Analysis

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Western blots were performed on whole cell lysates. RIPA buffer was used for protein extraction followed by centrifugation at 4 °C for 20 min to pellet cell debris. Protein lysate was boiled at 95 °C for 5 min in Laemmli buffer. Protein concentration was quantified by Bradford assay (Thermo Scientific), and 30 μg per sample was loaded and run in pre-cast gels (Bio-Rad). Samples were transferred to PVDF membranes overnight at 50 V. Antibodies used for Western blot analyses were: anti-SOCS1 (Abcam), anti-SOCS3 (Abcam), anti-pSTAT3 (Abcam), anti-pSTAT4 (Y693) (Abcam) anti-STAT3 (Cell Signaling), anti-STAT4 (Cell Signaling), anti-GAPDH (Abcam), anti-rabbit HRP-conjugated secondary antibody (Invitrogen). Transferred membranes were blocked using 5 % BSA in TBST for 2 h followed by primary antibody labeling in 5% BSA in TBST overnight. Membranes that were incubated with primary antibodies overnight were washed with TBST three times followed by secondary antibody staining in 5% BSA in TBST for 1 h. Membranes were treated with ECL solution (Bio-Rad) for 5 min and then exposed on films (GE).
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7

Extraction and Analysis of AFPR

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Dried Polyrhachis vicina Rogers was provided by Nanning Zhenyuan Biotechnology Co., LTD (Nanning, Guangxi, China), and the AFPR was obtained according to the previous extraction method.4 (link) Interleukin-6, Interleukin-7, and Interleukin-10 assay kits were provided by Shanghai Fanke Industrial Co., LTD (Shanghai, China). Beyotime Biotech inc. provides a step-by-step TUNEL apoptosis assays kit with green fluorescence (Shanghai, China). Anti-SOCS1 was provided by Abcam (UK). Trizol, the reverse transcription and amplification kit was provided by Vazyme Biotech Co., LTD (Nanjing, Jiangsu, China). The Mir-x miRNA First-Strand Synthesis Kit was provided by TaKaRa (Japan). Methylated RNA Immunoprecipitation (MeRIP) kit and RNA Immunoprecipitation (RIP) Kit were provided by Boxin Biotechnology Co., LTD (Guangzhou, China). RiboSCRIPTTM mRNA/lncRNA qRT-PCR Starter Kit was provided by Ruibo Biotechnology Co., LTD (Guangzhou, China).
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8

Western Blot Analysis of VEGF-C, SOCS1, and STAT3

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Cultured cells or brain tissues were lysed in RIPA lysis buffer, and the lysates were used in standard Western blotting assays. The anti‐VEGF‐C (1:100), anti‐SOCS1 (1:100), and anti‐STAT3 (1:5000) antibodies and the horseradish peroxidase–conjugated secondary antibody were purchased from Abcam. β‐Actin was used as an internal standard.
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9

Western Blot Analysis of Colonic Proteins

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Protein concentrations (n = 6) were determined in the supernatant of colonic tissues by classic BCA protein assay (Beyotime). Equal protein of each sample was fractionated onto sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred onto polyvinylidene fluoride (PVDF) membrane by a Bio-Rad Western blot apparatus. The membranes were blocked with 5% fat-free milk or 5% bovine serum albumin, and then probed with the following primary antibodies for 24 h at 4°C: GAPDH (1:2000), Anti-SOCS1(1:1000), Anti-SOCS3 (1:1000), Anti-JAK2 (1:1000), Anti-JAK2 (phospho Y1007 + Y1008) (1:500), Anti-STAT3 (1:1000), Anti-STAT3 (phospho Y705) (1:800), Anti-STAT6 (1:1000), Anti-STAT6 (phospho Y641) (1:800), Anti-PIAS3(1:1000) (Abcam, Cambridge, UK). The membranes were incubated with appropriate horseradish peroxidase-conjugated secondary antibodies (1:2000∼1:3000, Abcam, Cambridge, UK), and visualized with an enhanced chemiluminescence (ECL) detection kit (Millipore). Bands were quantified using Image-Pro Plus 5.0 software (Media Cybernetic, Bethesda, MD, USA).
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10

Western Blot Analysis of Cellular Proteins

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Total protein was extracted from whole cells and 20 μg of isolated protein was separated by SDS-PAGE and electroblotted onto a PVDF membrane (Bio-Rad Laboratories, Hercules, CA, USA). The membranes were then probed with antibodies: anti-SOCS1, anti-p21, anti-Cyclin D1 (Abcam, Cambridge, MA, USA). The membranes were stripped and reblotted with an anti-α-tubulin monoclonal antibody (Sigma) as a loading control.
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