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6 protocols using dynamis medium

1

Fab and IgG Protein Expression

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EPHA2-specific Fab fragments selected from antibody libraries were re-cloned into the pET22a plasmid and expressed in the periplasm of BLgold. After growing bacteria to OD600 = 0.5, Fab expression was induced by addition of 1 mmol/L IPTG and incubation of culture at 28°C for 15 hours. Fabs were expressed with heavy chain C-terminal c-Myc and His6 tags (CH-AAA-c-Myc-GAALE-His6) for assisting purification and detection. Fab fragments were purified using Ni+-resin (Profinity IMAC Resin, Ni-charged, Bio-Rad, 1560135).
IgGs were expressed in CHO-S culture grown in Dynamis medium (Thermo Fisher Scientific, A2661501) following transfection with the FectoPro reagent (Polyplus Transfection, 116–010). The antibodies were harvested on days 12–14 after transfection and purified using MabSelect resin (GE Healthcare, 17–5199–01). After binding in PBS, the antibodies were eluted with 100 mmol/L citrate buffer (pH 3.0) followed by immediate titration to pH = 5.5 using 1 mol/L Tris-HCl, pH = 8.0. The eluted protein was dialyzed against and stored in the formulation buffer composed of 20 mmol/L l-Histidine, 30 mmol/L Citric acid, 32 mmol/L Na2HPO4, pH = 6.0, 1% trehalose, 0,05% Tween-20.
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2

Heterogeneous IgG Characterization Protocol

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Formic acid (FA), Dynamis™ medium and CD-CHO medium were purchased from Thermo Fisher Scientific (Pittsburg, PA, United States). Trifluoroacetic acid (TFA) was obtained from TCI (Shanghai, China). Dithiothreitol (DTT) was purchased from Adamas (Shanghai, China). Acetonitrile, iodoacetamide (IAM), urea, β-mercaptoethanol, guanidine hydrochloride, ammonium carbonate, goat anti-human IgG(Fab) and trypsin were purchased from Sigma-Aldrich (St. Louis, MO, United States). Lys-C was obtained from Wako (Osaka, Japan). Peptide:N-glycosidase F (PNGase F) were purchased from New England BioLabs (Ipswich, Massachusetts, United States). IgG Purity and Heterogeneity Kit were purchased from SCIEX (CA, United States). 1% Methyl Cellulose, 0.5%Methyl Cellulose, pI Marker 5.85, pI Marker 9.77 were purchased from Protein Simple (San Francisco, California, United States). Pharmalyte 3–10 was purchased from Cytiva (MA, United States). Epidermal Growth Factor Receptor (EGFR) was from SinoBiological (Beijing, China). The synthesized peptide was prepared by GenScript (Nanjing, China). All the reagents used in our experiments were reagent grade or higher purity.
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3

Comparative Cell Culture Conditions for SARS-CoV-2 Pseudovirus

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HEK293 (ATCC, CRL-3216) cells, Huh7 (Institute of Basic Medical Sciences CAMS, 3111C0001CCC000679) cells and Vero (ATCC, CCL-81) cells were cultured at 37 °C in Dulbecco’s Modified Eagle medium (DMEM, Hyclone SH30243.01) supplemented with 10% fetal bovine serum (FBS). CHO-K1 (ATCC, CCL-61) cells were cultured at 37 °C in Dynamis Medium (GIBCO A2661501). Raji (ATCC, CCL-86) cells, THP-1 (ATCC, TIB-202) cells, K562 (ATCC, CCL-243) cells, and SC (ATCC, CRL-9855) cells were cultured at 37 °C in RPMI 1640 Medium (BasalMedia L220KJ) with 10% FBS. SARS-CoV-2 pseudovirus was prepared and provided by the Institute for Biological Product Control, National Institutes for Food and Drug Control (NIFDC)42 .
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4

Cloning and Production of Engineered Anti-EGFR Antibody

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Mouse anti-EGFR was purchased from BioXcell (Cat# BE-0279). Amino acid sequences of the heavy chain and light chain of hu-anti-EGFR (cetuximab) were retrieved from a database (32 (link)), cDNAs encoding both original cetuximab and the ACVC variant (A114C,V205C) were synthesized and cloned into the vector pGenHT1.0-DGV. Plasmids were transfected into CHO-K1SP cells to establish a stable cell line with the selection drug L-Methionine sulfoximine. To produce antibodies, stable cells with a starting density of 0.5 × 106 were cultured in Dynamis™ medium (Gibco 26615-01) for 14 d. EfficientFeed™ B media supplemented with AGT™ (Gibco A25030-05) was added on day 3 (3% of initial volume), day 5 (4%), day 7 (5%), and day 9 (5%). The final culture supernatant was loaded onto a 5 mL protein A column (Cytiva); after washing with 10 column volumes of PBS, the antibody was eluted with 0.1 M Glycine (pH2.5) and further purified using a 5mL Hitrap® desalting column (Cytiva).
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5

Generation of ADCs from Engineered Antibodies

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A fully human m276-SL expression plasmid containing S239C, L234A, L235A, and P329G (LALAPG) in the Fc domain of IgG1 was used to create a stable CHOK1 m276-SL expression cell line. For large scale production, stable cells were grown in Dynamis medium (Gibco, A2661501) with 25 μM MSX in fed-batch culture. The culture supernatant was collected on Day 12 or when the viability dropped below 60%, whichever occurred first. Antibody in the supernatant was purified using protein G affinity chromatography and dialyzed into PBS, pH 7.4. The purity of the antibody was monitored using SDS-PAGE and SEC-HPLC and antibodies with <5% aggregates were used for further ADC production. The DS-7300a ADC was generated by producing and purifying the B7-H3 humanized M30 antibody [Sequence 85 (HC) and 77 (LC) derived from US patent 9,371,395 B2] and randomly conjugating it to the exatecan derivative-based cytotoxic payload DXd (MedChemExpress, cat # HY-13631D) on endogenous cysteines via a cleavable tetrapeptide to create an average DAR of 4 as previously described.20 (link) m276-Tesirine was generated by randomly conjugating the m276 parent antibody to the drug-linker Tesirine (MedChemExpress) to obtain an average DAR of 2 as previously described.67 (link)
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6

Optimizing Monoclonal Antibody Expression in CHO Cells

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The complete pCHO vectors inserted with each mAb light and heavy chain were linearized by digestions with 15 µL of NruI enzyme for 50 µg of DNA. The digestion proceeded for 6 h at 37 °C. CHO-S cells (Gibco, Carlsbad, CA, USA) were transfected with the vectors for antibody expression. The procedure for stable transfection and the selection steps were performed with a Freedom TM CHO-STM Kit (Gibco, Carlsbad, CA, USA), following the manufacturer’s guidelines. At the end of each selection stage, aliquots of cells were frozen in liquid nitrogen. In four conditions, puromycin (Gibco, Carlsbad, CA, USA) and methotrexate (MTX) were used as selection agents. The pools were cultivated in a fed-batch for 14 days in Dynamis medium (Gibco, Carlsbad, CA, USA) to assess the specific productivity. The productivity of each stable pool was verified by glucose supplementation on days 3, 5, and 7. The mAbs were purified by affinity chromatography using protein-A Sepharose [17 (link)]. Purified protein was quantified by absorbance at 280 nm.
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