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Taqman snp genotyping assays probe

Manufactured by Thermo Fisher Scientific
Sourced in United States

TaqMan SNP Genotyping Assays probe is a real-time PCR-based product used for detecting and identifying single nucleotide polymorphisms (SNPs) in DNA samples. The probe contains a fluorescent reporter dye and a quencher dye that enable the detection and quantification of specific DNA sequences during the PCR process.

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4 protocols using taqman snp genotyping assays probe

1

Genotyping Protocols for SLC48A1 and HMOX1 Mice

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All mice used were housed in a 12 hr light-dark cycle. For SLC48A1 pups, genetic segregation was computed on 21 day old (P21) mice pups. SLC48A1 mice were genotyped from tail genomic DNA extracts using a custom ordered TaqMan SNP Genotyping Assays probe (ThermoFisher Scientific) on a Bio-rad CFX Connect system. For HMOX1/SLC48A1 mice, genetic segregation was computed on 5 day old (P6) mice pups via toe-clip DNA extracts. HMOX1 was genotyped by PCR using primers HMOX1 KO Forward 5’-GCTTGGGTGGAGAGGCTATTC-3’, HMOX1 KO Reverse 5’-CAAGGTGAGATGACAGGAGATC-3’, HMOX1 WT Forward 5’-GTACACTGACTGTGGGTGGGGGAG-3’, HMOX1 WT Reverse 5’-AGGGCCGAGTAGATATGGTAC-3’. Mice in all studies were males unless otherwise noted, although initial experiments to exclude gender variation were done using both males and females. All animal protocols were approved by the Institutional Animal Care and Use Committee at the University of Maryland, College Park (IACUC Animal Study Protocol R-NOV-18–61).
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2

Genetic Segregation in Transgenic Mice

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All mice used were housed in a 12 hr light-dark cycle. For SLC48A1 pups, genetic segregation was computed on 21 day old (P21) mice pups. SLC48A1 mice were genotyped from tail genomic DNA extracts using a custom ordered TaqMan SNP Genotyping Assays probe (ThermoFisher Scientific) on a Bio-rad CFX Connect system. For HMOX1/SLC48A1 mice, genetic segregation was computed on 5 day old (P6) mice pups via toe-clip DNA extracts. HMOX1 was genotyped by PCR using primers HMOX1 KO Forward 5’-GCTTGGGTGGAGAGGCTATTC-3’, HMOX1 KO Reverse 5’-CAAGGTGAGATGACAGGAGATC-3’, HMOX1 WT Forward 5’-GTACACTGACTGTGGGTGGGGGAG-3’, HMOX1 WT Reverse 5’-AGGGCCGAGTAGATATGGTAC-3’. Mice in all studies were males unless otherwise noted, although initial experiments to exclude gender variation were done using both males and females. All animal protocols were approved by the Institutional Animal Care and Use Committee at the University of Maryland, College Park (IACUC Animal Study Protocol R-NOV-18–61).
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3

Genotyping VEGFR2 Gene Variants

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DNA extractions were performed using the ‘IllustraTM blood genomicPrep Mini Spin’ kit (GE Healthcare Life Science, USA). DNA concentration was measured using the NanoDrop ND-1000 spectrophotometer (Thermo Fisher Scientific). To study VEGFR2 gene variants, three SNPs previously reported of interest in the literature were studied: rs7692791, rs1870377, and rs2305948. The genotype analysis of the SNPs of interest was carried out by quantitative PCR, using TaqMan SNP Genotyping Assays probes (Thermo Fisher Scientific Inc.). Each reaction contained 5 μl TaqMan Genotyping Master Mix, 0.5 μl Taqman Probe Assay 40x, and 10 ng/μl of DNA and analyzed setup in the QuantStudio 5 thermocycler (Thermo Fisher Scientific Inc.).
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4

DNA Genotyping of VDR and VDBP Genes

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DNA was isolated using the QIAamp DNA blood mini kit (Qiagen, Hilden, Germany) according to manufacturer’s instructions. Eight gene polymorphisms in the VDR (rs7975232, rs1544410, rs731236, rs3847987, rs2228570, rs11168293), and VDBP (rs4588, rs7041) genes in chromosome regions 12q13.11 and 4q13.3 were analyzed using TaqMan SNP Genotyping Assays probes (Thermo Fisher Scientific, CA, USA), respectively, according to the manufacturer’s protocol.
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