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6 protocols using percp cy5.5 conjugated anti cd3

1

Flow Cytometric Analysis of Immune Cell Subsets in ARDS

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Cells from the BALF were stained with surface markers, including PE-Cy7 conjugated anti-CD45 (BD Biosciences, CA, USA), AF488 conjugated anti-CD11b (BD Biosciences, CA, USA), and PE conjugated anti-Ly6G (BD Biosciences, CA, USA). Cells from blood and spleen were stained with various surface markers, including PE-Cy7 conjugated anti-CD45 (BD Biosciences, CA, USA), Percp-cy5.5 conjugated anti-CD3 (BD Biosciences, CA, USA), FITC conjugated anti-CD4 (BD Biosciences, CA, USA), PE conjugated anti-CD25 (BD Biosciences, CA, USA), and APC conjugated anti-CD39 (BD Biosciences, CA, USA).
Peripheral blood mononuclear cells (PBMCs) from ARDS patients and healthy donors were stained with PerCP conjugated anti-CD3 (BD Biosciences, CA, USA), FITC conjugated anti-CD4 (BD Biosciences, CA, USA), APC conjugated anti-Foxp3 (BD Biosciences, CA, USA), and PE conjugated anti-CD39 (BD Biosciences, CA, USA). This study was approved by the Jinling Hospital Ethics Review Committee and written informed consent was provided by all subjects or their legal representatives.
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2

Profiling Immune Cell Subsets

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Peripheral white blood cells were isolated through hemolysis by adding FACS lysing solution (BD Biosciences, San Jose, CA, USA). After the precipitates were washed twice by phosphate-buffered saline (PBS), cells were labelled according to our routine method [14 (link)]. Antibodies for PerCP-Cy5.5-conjugated anti-CD3; APC-conjugated anti-CD4; FITC-conjugated anti-CD45RA; PE-conjugated anti-CD25 and anti-Vδ2; PE-Cy7-conjugated anti-CD28 and anti-NKG2D; BV421-conjugated anti-56, anti-127, anti-CD194, and anti-TCRγδ; BV510-conjugated anti-CD8 and anti-NKP46; Alexa Fluor 647-conjugated anti-CCR7 and anti-CXCR5; Alexa Fluor 484-conjugated anti-CD183, and BB515-conjugated anti-PD-1 were purchased from BD Biosciences.
Samples were run on a BD LSR Fortessa™ cell analyzer (BD Biosciences) at Shuangzhi Purui Medical Laboratory Co., Ltd. (China), and the data were analyzed using FlowJo 10.1 software (Tree Star Inc., Ashland, USA).
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3

Multiparameter Flow Cytometry Protocol

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All antibodies were pre-titrated to determine appropriate working concentrations. Immunostaining with periridin-chlorophyll protein (PerCp)-Cy5.5-conjugated anti-CD3 (BD Biosciences, clone UCHT1), allophycocynanin (APC)-H7-conjugated anti-CD8 (BD Biosciences, clone SK1) and APC-conjugated anti-CD161 (BD Biosciences, clone DX12) in the phenotypic characterization of MAIT cell was performed according to the protocol set by the commercial manufacturer (BD Biosciences). Surface staining for specific receptors was performed using monoclonal antibodies (mAbs) directed against: FITC-conjugated PD-1 (clone MIH4), phycoerythrin (PE)-conjugated CCR6 (clone 11A9), PerCp-Cy5.5-conjugated CCR5 (clone 3A9) and PE-conjugated TCR Vα7.2 (clone 3C10) (all mAbs procured from BD Biosciences). Immunostained samples were washed twice prior to acquisition on a FACS Canto II Immunocytometry system (BD Biosciences) and analyzed using FACS Diva software. Data were analyzed using FlowJo (version 9.3.1 and version 10). Doublets were excluded based on FSC-H and FSC-A, lymphocytes were identified based on FSC and SSC, and dead cells were excluded based on BD Horizon Fixable Viability Stain 510 (BD Biosciences). CD3+ and CD8+ T lymphocytes were identified. Fluorescence minus one (FMO) controls was used for optimal gating.
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4

Quantifying Immune Cell Activation

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After co-culture, cells were harvested and analyzed for epitope-specific expression of the enhanced green fluorescent protein (EGFP; 2D3 cells) or expression of the activation markers CD137 and CD69 (primary CD8 T cells). Samples from 2D3 cell co-cultures were washed, incubated with PE-conjugated anti-CD8 for 15 min at room temperature. Then, samples were rewashed and stained with the nucleic acid dye 7-aminoactinomycin D (7-AAD; BD Biosciences) for 10 min at room temperature for the exclusion of nonviable cells before analysis on a CytoFLEX cytometer (Beckman Coulter). Samples from primary CD8 T cell co-cultures were washed and stained with anti-human PE-conjugated anti-CD137, PerCP-Cy5.5-conjugated anti-CD3, APC-Cy7-conjugated anti-CD69 (BD Biosciences) and Pacific Blue-conjugated anti-CD8 (Life Technologies) monoclonal antibodies and LIVE/DEAD fixable aqua dead cell stain kit (Thermo Fisher Scientific) for 15 min at room temperature. After incubation, cells were washed and analyzed using a FACSAria II cytometer (BD Biosciences).
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5

Multiparametric Flow Cytometry Analysis

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Single-cell suspensions were prepared from spleens or from cell cultures. Antibodies for surface staining, PerCP-Cy5.5-conjugated anti-CD3, PE-conjugated anti-CD4, FITC-conjugated anti-PD-1, APC-conjugated anti-CXCR5, Alexa Fluor 647-conjugated anti-GL7 and FITC-conjugated anti-PD-1 were purchased from BD bioscience. For intracellular staining, splenocytes were first stained with surface markers followed by fixation and permeabilization using FoxP3 Staining Buffer set purchased from eBioscience53 (link). Cells were labelled intracellularly PE-conjugated anti-Bcl-6 (eBioscience, San Diego, CA, USA), PE-conjugated anti-IL-17, APC- conjugated anti-IFN-γ or PerCP-Cy5.5- conjugated anti-FoxP3 (BD Biosciences, San Diego, CA, USA). Flow cytometry was performed on 4-laser/13-color BD LSRFortessa (BD Biosciences) and data were analyzed using FlowJo software (Tree Star, Ashland, OR).
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6

Flow Cytometry Analysis of Immune Cells

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The following antibodies were purchased from BD Biosciences (San Jose, CA, USA) and used for flow cytometry analysis: FITC-conjugated anti-Ly6C, anti-CD69, anti-CD11b, and anti–TNF-α; PE-conjugated anti-Ly6G, anti-CD8, and anti–IFN-γ; PerCP-Cy5.5–conjugated anti-CD3; PE-Cy7–conjugated anti-NK1.1 and anti-CD45; allophycocyanin(APC)-conjugated anti-CD45.2, and anti-CD11c; APC-Cy7–conjugated anti-CD4 and anti-CD45.1. APC-conjugated anti-F4/80 were purchased from eBioscience (San Diego, CA, USA). Stained cells were collected using a BD LSR II (BD Biosciences) flow cytometer, and data were analyzed using FlowJo 7.6 software (Tree Star, Ashland, OR, USA). For NK cell depletion, mice were injected with 30 μl anti-ASGM1 antibody once a week (Wako Co., Tokyo, Japan). For NK1.1+cell depletion, mice were intraperitoneally injected with 200 μg anti-NK1.1 (Clone PK136, purified from ascites).
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