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10 protocols using nheks

1

Cell Culture Maintenance Protocols

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HeLa, A549, and THP-1 cell lines were purchased from ATCC, the HaCat cell line was purchased from Cell Lines Service, HUVECs and NHEKs were purchased from PromoCell, and Caco-2 cells were purchased from the Riken Cell Bank. HeLa and A549 cells were maintained in Dulbecco’s modified Eagle’s medium (Nacalai Tesque) supplemented with 10% fetal bovine serum (FBS; Gibco) and 50 μg/ml gentamicin (Nacalai Tesque), and the THP-1 cells were cultured in RPMI 1640 medium (Nacalai Tesque) supplemented with 10% FBS and 50 μg/ml gentamicin. THP-1 cells were differentiated into macrophages by stimulating them with 50 ng/ml phorbol 12-myristate for 72 h. HUVECs were maintained with the endothelial cell growth medium 2 kit (PromoCell) supplemented with 10% FBS and 50 μg/ml gentamicin. NHEKs were cultured with the keratinocyte growth medium 2 kit (PromoCell), and Caco-2 cells were maintained in minimum essential medium (Wako) supplemented with 10% FBS and 50 μg/ml gentamicin. Cells were incubated in a 5% CO2 incubator at 37°C.
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2

Cell Culture Protocols for Keratinocyte and Cancer Cell Lines

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Normal human epidermal keratinocytes (NHEKs) obtained from PromoCell (Heidelberg, Germany) were cultured in Keratinocyte Growth Medium 2 (PromoCell). HaCaT, HaCaT-AHR-KO, HaCaT-CYP1A1-KO and HaCaT-NRF2-KO keratinocytes were cultured in DMEM low glucose (1 g/l) medium (PAN Biotech, Aidenbach, Germany) and supplemented with 10% FBS and antibiotics/antimycotics (PAN Biotech). Stable AHR-knockdown HaCaT keratinocytes (HaCaT-shAHR) and respective empty vector control cells (HaCaT-EV) were cultured in regular HaCaT medium supplemented with 0.68 mg/ml G418 (Carl Roth, Karlsruhe, Germany). MCF-7 and MCF-7-AHR-KO cells were cultured in DMEM high glucose (4.5 g/l) medium (PAN Biotech) supplemented with 10% FBS and antibiotics/antimycotics. The generation and characterization of HaCaT-shAHR and HaCaT-EV cells (Fritsche et al., 2007 (link)) and MCF-7-AHR-KO cells (Vogel et al., 2021 (link)) has been previously described. HepG2 cells were cultured in RPMI 1640 containing 10% FBS and antibiotics/antimycotics (PAN Biotech). All cells were kept in a humidified atmosphere of 5% CO2 at 37 °C.
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3

Cultivation of Oral Squamous Cell Carcinoma and Normal Keratinocytes

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SAS [28 ], HSC 3 [29 (link)], and HSC 4 cells [29 (link)] (human oral squamous cell carcinoma-derived cell lines, kindly gifted by Dr. Ochiya, National Cancer Center) were grown in high glucose Dulbecco's modified Eagle's medium (HDMEM) with L-Glutamine and Phenol Red (Wako, Osaka, Japan), supplemented with 10% fetal bovine serum (FBS), 100 U/mL penicillin, and 100 mg/mL streptomycin at 37 °C, with 5% CO2 and 100% humidity. Normal human epidermal keratinocytes (NHEKs) were purchased from Promo Cell (Heidelberg, Germany) and grown in endothelial cell growth medium (Promo Cell) according to the manufacturer’s protocol. Hypoxic conditions were set at 37 °C, 2% O2 [30 (link)], and 5% CO2 in a BIOLABO mini-multi-gas-incubator (BL-43MD, TOSC, Tokyo, Japan).
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4

Culturing Normal Human Epidermal Keratinocytes

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NHEKs, obtained from Promocell Inc. (Heidelberg, Germany), were cultured in serum-free keratinocyte growth medium 2 (Promocell) supplemented with bovine pituitary extract, recombinant epidermal growth factor, insulin, hydrocortisone, epinephrine, transferrin, and CaCl2 at standard cell culture conditions (37℃, 5% CO2 in a humidified incubator). All experiments were performed using cells between the 2nd and 7th passages.
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5

Establishing cSCC Cell Lines from Surgical Samples

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Human cSCC cell lines (n = 8) were initiated from surgically removed cSCCs.24 Five cSCC cell lines were derived from primary cSCCs: UT‐SCC‐12A, UT‐SCC‐91, UT‐SCC‐105, UT‐SCC‐111 and UT‐SCC‐118. Three cSCC cell lines were from metastatic cSCCs: UT‐SCC‐7, UT‐SCC‐59A and UT‐SCC‐115. These cell lines were authenticated by short tandem repeat DNA profiling.24 Primary normal human epidermal keratinocytes (NHEKs) were obtained from PromoCell (Heidelberg, Germany). NHEKs were cultured from normal skin of patients (n = 11) who had undergone mammoplastic surgery at Turku University Hospital, Turku, Finland. Cell cultures were performed as previously described.21, 22, 23
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6

Cultivating human skin fibroblasts and keratinocytes

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We cultivated primary human skin fibroblast lines (HF40 and HFF-1) (n = 2 each) that were obtained from the American Type Culture Collection (ATCC, Manassas, VA) and cultivated in Dulbecco's minimum essential medium supplemented with 10% fetal calf serum and, when confluent, medium was supplemented with or without recombinant human (rh)-IL-17 (R&D System, Minneapolis, MN) of 200 ng ml−1 (same IL-17 source and concentration used in prior experiments with human keratinocytes) [10] (link), [12] (link). After 24-hour incubation, fibroblasts were harvested for further analyses.
We also cultivated NHEKs obtained from PromoCell, in the Keratinocyte Growth Medium 2 supplemented with 0.004 ml/ml BPE, 0.125 ng/ml EGF, 5 ug/ml Insulin, 0.33 ug/ml Hydrocortisone, 0.39 ug/ml Epinephrine, 10 ug/ml Transferrin, and 0.06 mM Ca++ (all items purchased from PromoCell GmbH, Heidelberg, Germany). The experiment was performed in triplicate.
Once 70–80% confluent, the medium was changed with full media containing 0.06 mM Ca++, 1.2 mM Ca++, or 1.2 mM Ca++ plus 2.0% FBS, for 24 and 48 hours before harvesting for other analyses.
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7

Cell Culture and Transfection Protocols

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Cell lines 293FT, A549, 1321 N1, Shh-Light2 (Shh-L2) and U2OS were purchased from ATCC. HUH7 cells were a kind gift from Dr. Pirjo Spuul. Adult pooled normal human epithelial keratinocytes (NHEKs, PromoCell) (kind gift from Dr. Ana Rebane) were grown in Defined Keratinocyte-SFM Medium (DKSM) (Gibco, Thermo Fisher Scientific). 293FT, A549, 1321 N1, and Shh-L2 cell lines were cultured in Dulbecco's Modified Eagle Medium-high glycose (DMEM, Pan Biotech) supplemented with 10% foetal calf serum (FCS, Pan Biotech) and 1% penicillin/streptomycin (PEST, Sigma-Aldrich). The growth medium of Shh-L2 cells also contained 0.4 mg/ml G418 (Sigma-Aldrich) and 0.1 mg/ml zeocine (Invitrogen). U2OS cells were propagated in Iscove's Modified Dulbecco's Medium (IMDM, Pan Biotech), 10% FCS and 1% PEST. Cells were propagated at 37°C in 5% CO2. HUH7 cells were transfected using Lipofectamine 2000 (Life Technologies). 293FT and Shh-L2 cells were transfected using polyethylenimine (PEI) as previously described [9 (link)]. U2OS cells were co-transfected with HPV minicircle genomes and GLI1FL or GLI1ΔN encoding constructs by electroporation (220 V and 975 μF) using a Gene Pulser XCell system (Bio-Rad Laboratories).
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8

Culturing Primary Human Cell Lines

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NHDFs and NHEKs were purchased from Promocell, Tebu—bio, GIBCO or Cambrex. HMECs were purchased from Bio-Whittaker. For details, see Supplementary Table 1. Cells were grown at 37 °C in an atmosphere of 5% CO2 and at the atmospheric O2 tension. NHEKs were cultured in the KGM-GoldTM bulletkit medium (Clonetics). It consists of modified MCBD153 with 0.15 mM calcium, supplemented with bovine pituitary extract, epidermal growth factor, insulin, hydrocortisone, transferrin and epinephrine. Such a serum-free low-calcium medium has been shown to minimize keratinocyte terminal differentiation66 (link). NHDFs were cultured in FGMTM-2 bulletkit medium. HMECs were cultured in MEGMTM bullekit medium.
Cells were seeded as recommended by the supplier and subcultured at 70% confluence. The number of PDs was calculated at each passage by using the following equation: PD=log (number of collected cells/number of plated cells)/log2.
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9

Cultivation of Human Dermal Papilla and Keratinocytes

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The HFDPCs were purchased from PromoCell (Heidelberg, Germany) and cultured in Follicle Dermal Papilla Cell Growth Medium Kit (PromoCell) supplemented with 1% (v/v) penicillin/streptomycin (PS, Gibco BRL). Normal human epithelial keratinocytes (NHEKs) were purchased from PromoCell and cultured in keratinocyte growth medium 2 (PromoCell) supplemented with 1% (v/v) PS. The cells were incubated in 150-mm cell culture Petri dishes (Corning Inc., Corning, New York, NY, USA) until they reached 70–80% confluence. The cells were incubated at 37 °C and 5% CO2 saturation. The cell culture medium was changed every 3 days. Cells within 4 passages were used for the experiments.
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10

Cell Culture Protocols for Keratinocyte and Cancer Cell Lines

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Normal human epidermal keratinocytes (NHEKs) obtained from PromoCell (Heidelberg, Germany) were cultured in Keratinocyte Growth Medium 2 (PromoCell). HaCaT, HaCaT-AHR-KO, HaCaT-CYP1A1-KO and HaCaT-NRF2-KO keratinocytes were cultured in DMEM low glucose (1 g/l) medium (PAN Biotech, Aidenbach, Germany) and supplemented with 10% FBS and antibiotics/antimycotics (PAN Biotech). Stable AHR-knockdown HaCaT keratinocytes (HaCaT-shAHR) and respective empty vector control cells (HaCaT-EV) were cultured in regular HaCaT medium supplemented with 0.68 mg/ml G418 (Carl Roth, Karlsruhe, Germany). MCF-7 and MCF-7-AHR-KO cells were cultured in DMEM high glucose (4.5 g/l) medium (PAN Biotech) supplemented with 10% FBS and antibiotics/antimycotics. The generation and characterization of HaCaT-shAHR and HaCaT-EV cells (Fritsche et al., 2007 (link)) and MCF-7-AHR-KO cells (Vogel et al., 2021 (link)) has been previously described. HepG2 cells were cultured in RPMI 1640 containing 10% FBS and antibiotics/antimycotics (PAN Biotech). All cells were kept in a humidified atmosphere of 5% CO2 at 37 °C.
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