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4 protocols using anti cd8 apc cy7 clone sk1

1

Multiparametric Flow Cytometry Analysis

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Following treatment of whole blood with antibody, triplicate samples were pooled and 50 μL of cells were stained with anti-CD45 BV510 (clone HI30, BIOLEGEND#304036), anti-CD3 APerCPCy5.5 (clone UCHT1, BIOLEGEND#300430), anti-CD4 V450 (clone RPA-T4, BD#560343), anti-CD8 APCCY7 (clone SK1, BL#344714), anti-CD69 FITC (clone FN50, BIOLEGEND#310904, Lot#2230656), isotype control FITC (clone MOPC-21, BD#555748, Lot#28391) for 30 min at room temperature. After washing, erythrocytes were lysed with pharmlyse buffer BD#555899. Cells were then washed and resuspended. Data were acquired on a BD Canto II flow cytometer and analyzed using FlowJo software (Trestar). A student's t-test was used to test for statistically significant increases compared to the TAA1-TCB monomer.
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2

SARS-CoV-2 T Cell Immunity Evaluation

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SARS-CoV-2 specific CD4+ T and CD8+ T cell immunity against the inactivated COVID-19 vaccine were evaluated by intracellular cytokine staining (ICS) combined flow cytometry among PLWH and HC on day 14 after the second dose, before the booster dose, and on days 14, 30, and 180 after the booster dose vaccination. 1×106 PBMCs were incubated overnight with SARS-CoV-2 Spike peptide pool (1mg/ml) containing 23 peptides from the wild-type SARS-CoV-2 virus in a 200μL final volume medium in round-bottom 96-well plates at 37°C and 5% CO2. Brefeldin A (10μg/ml) (GolgiPlug, BD Biosciences) was added in the last 5 hours of incubation. Surface marker staining was performed with anti-CD3-PerCP-cy5.5 (clone UCHT1; Biolegend), anti-CD8-APC-Cy7 (clone SK1; Biolegend), and anti-CD4-PE-Cy7 (clone RPA-T4; Biolegend) for 30 min at 4°C in the dark. Fixation and permeabilization solution (Cytofix/Cytoperm; BD Biosciences) was added for 45 min at 4°C in the dark. Intracellular cytokines staining with anti-IFN-γ-PE (clone 4S.B3; Biolegend) and anti-TNF-α-APC (clone MAb11; Biolegend) was then performed according to the manufacturer’s instructions. The stained cells were fixed with 2% paraformaldehyde and then analyzed by flow cytometry. Data were analyzed with FlowJo software version 10, and the gating strategy is shown in Supplementary Figure 1.
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T Cell Activation by Transfected Melanoma Cells

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Intracellular cytokine staining was performed to determine the activation of CD8 T cells by 3pRNA-transfected and poly(I:C)-transfected autologous melanoma cells. The T cell-stimulatory capacity of 3pRNA, poly(I:C) or Ctrl RNA-treated melanoma cells was determined 24 hours and/or 3 days after transfection. For long-term 3pRNA or Ctrl RNA treatment, melanoma cells were transfected twice (days 0 and 6) and subjected to T cells 24 hours later (day 7). Briefly, T cells were stimulated with indicated autologous melanoma cells (1:1 ratio) for 4 hours in the presence of Brefeldin A (10 µg/mL; Sigma-Aldrich) at 5% CO2, 37°C. Afterward, cells were fixed and permeabilized using Fixation/Permeabilization Kit (eBioscience) and stained with an antibody cocktail containing anti-CD3-BV421 (clone UCHTI, BioLegend); anti-CD8-APC/Cy7 (clone SK1, BioLegend), anti-IFN-γ-PE (clone B27, BioLegend) and anti-TNF-α-PE/Cy7 (clone Mab11, BioLegend). For cell analysis and data processing, the Gallios flow cytometer and Kaluza software were used, respectively (Beckman Coulter).
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PBMC Surface Marker Profiling

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After resuscitation and counting, 1 × 106 PBMCs were suspended with a 200μL final volume. For surface marker staining, cells were stained with specific antibodies for 30 min at 4 °C in the dark. The following antibodies were used: anti-CD3-PerCP-cy5.5 (clone UCHT1; Biolegend), anti-CD8-APC-Cy7 (clone SK1; Biolegend), anti-CD4-PE-Cy7 (clone RPA-T4; Biolegend), anti-TCRγδ-FITC (clone B1; Biolegend), anti-Fas-APC (clone DX2; BD Biosciences), Annexin V-PE (Annexin V PE Apoptosis kit, Cat#559763, BD Biosciences), anti-CCR5-PE (clone J418F1; Biolegend), anti-CXCR3-APC (clone G025H7; Biolegend), anti-CXCR4-PE (clone 12g5; Biolegend), anti-CCR7-APC (clone G043h7; Biolegend). The stained cells were fixed with 2% paraformaldehyde and then analyzed by flow cytometry.
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