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5 protocols using α tubulin 2125

1

Stemness Factor Expression Analysis

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Cells treated with physciosporin for 48 h were washed twice with ice-cold phosphate-buffered saline (PBS) and lysed in lysis buffer [30 (link)]. Antibodies against ALDH1 (sc-166362; Santa Cruz Biotechnology, Dallas, TX, USA), CD133 (CA1217; Cell Applications, San Diego, CA, USA), CD44 (3570; Cell Signaling Technology, Danvers, MA, USA), Lgr-5 (ab75850; Abcam, Cambridge, MA, USA), and Msi-1 (ab52865, Abcam) were used to detect stemness factors. α-tubulin (2125, Cell Signaling Technology) antibody was used as an internal control. The luminescence photon from proteins were detected by an Image Quant LAS 4000 mini using horseradish peroxidase-conjugated secondary antibody (Thermo Fisher Scientific, Waltham, MA, USA) with an Immobilon Western Chemiluminescent HRP Substrate Kit (Merck Millipore, Billerica, MA, USA). Quantitation of bands were performed by using Multi-Gauge 3.0 software, and the relative density of each band was calculated based on the density of the internal control bands in each sample. Values are shown as arbitrary densitometric units corresponding to signal intensity. All results are representative of at least three independent experiments.
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2

Dissecting TNFα-Mediated Signaling Pathways

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Recombinant Human and murine TNFα were obtained from Peprotech. LPS (from Escherichia coli O111:B4) was purchased from Sigma. VCAM-1 (sc-13160), ICAM-1 (sc-1511-R) and β-actin (sc-47778) antibodies were from Santa Cruz Biotechnology. TRIM47 antibody (26885-1-AP) was purchased from Proteintech. Phospho-p65 (3033), p65 (8242), IκBα (4812), phospho-IκBα (2859), phospho-IKKα/β (2078), IKKα (11930), IKKβ (8943), phospho-JNK (4668), JNK (9252), phospho-ERK1/2 (4370), ERK1/2 (4695), phospho-p38 (4511), p38 (8690),TRAF2 (4724), TRAF6 (8028), TAK1(5206), IKKγ (2685), TBP (44059), Flag (8146 and 2368) and α-tubulin (2125) antibodies were purchased from Cell Signaling Technology. VE-cadherin (ab33168), ubiquitin (ab7780), ubiquitin (K48, ab140601), and ubiquitin (K63, ab179434) antibodies were purchased from Abcam.
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3

Mechanism of 18β-GA-d in Cells

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Aprotinin, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), leupeptin, phenylmethylsulfonyl fluoride (PMSF), sodium fluoride (NaF), propidium iodide, sodium orthovanadate, mitomycin C, type I collagen, and tetrahydrofuran (THF) were purchased from Sigma Chemical Co. (St Louis, MO). Antibodies (Abs) against AQP-3 (sc-20811), p38 (sc-535), ERK2 (sc-154), JNK1/3 (sc-474) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). Abs against p-AKT (#9271), Akt (#9272), p-ERK1/2 (#9101), p-P38 (#9211), p-JNK (#9251), and α-tubulin (#2125) were obtained from Cell Signaling Technology (Beverely, MA). U0126, MK2206, and SB203580 were obtained from Merck Millipore (Billerica, MA). The 18β-GA derivative (18β-GA-d) was provided by Dr. Chun-Nan Lin. For all the experiments in the study, the 18β-GA-d was dissolved in THF.
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4

Comprehensive Protein Expression Analysis

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The procedure was performed as described [2 (link),25 (link)]. Specifically, tissue and cell lysates were prepared with PLC lysis buffer (30 mM Hepes, pH 7.5, 150 mM NaCl, 10% glycerol, 1% Triton X-100, 1.5 mM MgCl2, 1 mM EGTA, 10 mM NaPPi, 100 mM NaF, 1 mM Na3VO4) supplemented with protease inhibitor cocktail (Roche) and 1 mM PMSF. Total protein concentrations of the lysates were determined using a DC protein assay kit (Bio-Rad). Antibody (catalog number) information: GAPDH (600004-1-lg), Fundc1 (28519-1-AP), CTSL (66914-1-1g), Pink1 (23274-1-AP), Pgc1α (66369-1-lg), Mfn1 (13798-1-AP), Drp1 (12957-1-AP), Tfam (22586-1-AP), LC3 (14600-1-AP), UCP1 (23673-1-AP), FoxO3 (10849-1-AP), and OPA1 (27733-1-AP) antibodies were purchased from Proteintech (Rosemont, IL, U.S.A.); FoxO1 (9454s), Atg7 (8558s), acetyl-lysine (9441s), and α-Tubulin (2125) antibodies from Cell Signaling Technology (Beverly, MA, U.S.A.).
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5

Antibody and Compound Protocol for Cell Signaling

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Anti SREBP1 (ab3259), and LAMP1 (ab24170) antibodies were purchased from Abcam, Cambridge, UK. Anti SREBP2 (sc13552) and β-actin (sc47778) were purchased from Santa Cruz Biotechnology. Anti ACC1 (4190), phospho-ACC1 Ser79 (3661), AMPKα1 (5832), phospho-AMPKα Thr172 (2535), LC3B (2775), Nibrin (14956) and α-Tubulin (2125) were purchased from Cell Signaling Technology. Anti SQSTM1/p62 Ab (P0067), metformin (PHR1084), dorsomorphin (P5499), Lovastatin (PHR1285), T0901317 (T2320) and Bafilomycin A1 (B1793) were purchased from Merck Life Science. Risperidone (S1615), olanzapine (S2493), ziprasidone (S1444) and U18666A (S9669) were purchased from DivBioScience.
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