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4 protocols using anti v5 tag

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Western Blotting: Antibody Detection

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Western blotting was performed according to standard laboratory protocols. Antibodies used were: anti-H3K36me3 (Abcam, 9050; 1:1000), anti-H3 (Abcam, 1791; 1:5000), anti-HA (Covance, MMS-101P; 1:2000), anti-H2AX (Millipore 05-636; 1:5000) anti-Tubulin (Abcam, 7291; 1:5000), anti-RCC-1 (Santa Cruz, sc-55559; 1:2000), anti-p21 (Santa Cruz, sc-6246; 1:1000), anti-GAPDH (Santa Cruz, sc-365062; 1:1000), anti-V5-tag (Cell Signaling, 13202; 1:2000), anti-Myc (Abcam, 9106; 1:10000). Secondary antibodies used were: goat anti-mouse HRP (Jackson ImmunoResearch, 115-035-03 or Thermo Fisher Scientific, 31430; 1:5000), goat anti-rabbit HRP (Jackson ImmunoResearch, 111-035-003 or Thermo Fisher Scientific 31460; 1:5000). Uncropped scans of all blots are shown in Supplementary Fig. 12.
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2

Western Blotting of RAG1-Deficient Cells

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Western blotting samples were prepared with short-term cultured RAG1-deficient primary pro-B cells, cycling RAG1-deficient v-Abl cells, and G1-arrested RAG1-deficient v-Abl cells with or without Wapl depletion. Western blotting experiments were performed according to published protocol with a few modifications36 (link). 10 million cells were harvested and lysed. Indicated antibodies (anti-Wapl, Thermo Fisher Scientific, #PA5–38024, 1:500; anti-V5-tag, #R960–25, 1:1000; anti-β-actin, Cell Signaling Technology, #3700, 1:3000) were used for the related western blotting experiments. For quantification and comparison of Wapl protein levels, the integrated density of Wapl and β-actin western blotting bands were calculated by Image J (version 1.42q) (Fig. 4b; Extended Data Fig. 6i). See Supplementary Figure 1 for uncropped scan blots with individual repeats.
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3

Western Blotting of RAG1-Deficient Cells

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Western blotting samples were prepared with short-term cultured RAG1-deficient primary pro-B cells, cycling RAG1-deficient v-Abl cells, and G1-arrested RAG1-deficient v-Abl cells with or without Wapl depletion. Western blotting experiments were performed according to published protocol with a few modifications36 (link). 10 million cells were harvested and lysed. Indicated antibodies (anti-Wapl, Thermo Fisher Scientific, #PA5–38024, 1:500; anti-V5-tag, #R960–25, 1:1000; anti-β-actin, Cell Signaling Technology, #3700, 1:3000) were used for the related western blotting experiments. For quantification and comparison of Wapl protein levels, the integrated density of Wapl and β-actin western blotting bands were calculated by Image J (version 1.42q) (Fig. 4b; Extended Data Fig. 6i). See Supplementary Figure 1 for uncropped scan blots with individual repeats.
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4

Western Blotting for NS5A Protein

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Cells were washed twice in PBS and lysed in Glasgow Lysis Buffer [GLB; 1 % (vol/vol) Triton X-100, 120 mM KCl, 30 mM NaCl, 5 mM MgCl2, 10 % (vol/vol) glycerol, 10 mM PIPES [piperazine-N,N′-bis(2-ethanesulfonic acid)]-NaOH, pH 7.2, with protease and phosphatase inhibitors], and clarified by centrifugation at 2800 g for 5 min at 4 °C. Protein concentration was measured for normalization by bicinchoninic acid assay (BCA, Pierce). Proteins were resolved on 7.5 % polyacrylamide gel before being transferred to polyvinylidene difluoride (PVDF) membrane. Membranes were blocked in 50 % (v/v) Odyssey blocking buffer (LI-COR) in Tris-buffered saline (TBS) and incubated in primary antibodies overnight at 4 ˚C and infra-red tagged secondary antibodies (LI-COR) at room temperature for 1 h. Primary antibodies used were anti-NS5A (sheep, 1 : 5000, [36 (link)]), anti-V5 tag (rabbit, 1 : 1000, Cell Signalling Technologies) and anti β-actin (mouse, 1 : 20 000, abcam). Secondary antibodies were anti-sheep, anti-rabbit (both 800 nm) and anti-mouse (680 nm), all used at 1 : 15 000. Membranes were imaged using a LI-COR Odyssey infra-red imaging system.
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