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4 protocols using p44 42 mapk erk1 2 l34f12

1

Protein Analysis via Western Blotting

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For protein analysis, cells were resuspended in a lysis RIPA buffer (#89901, Thermo, IL, USA) containing Phosphatase (#78426, Thermo, IL, USA) and Protease (#78429, Thermo) inhibitors cocktails at 4 °C, followed by the BCA protein assay (#23225, Thermo, IL, USA). Protein samples were separated electrophoretically by 15% SDS–PAGE and were then transferred to a polyvinylidene difluoride membrane (#ISEQ0001, Sigma-Aldrich, UK). The membranes were incubated with primary and secondary antibodies and then developed with enhanced chemiluminescence (#170-5061, Bio-Rad, CA, USA). The primary antibodies and their dilution factors were the 1 : 1000. For the western analysis, phospho-p44/42 MAPK (T202/Y204) (#4370S, Cell Signaling, MA, USA), p44/42 MAPK (Erk1/2) (L34F12) (#4696S, Cell Signaling, MA, USA), PARP and cleaved PARP (#9542S, Cell Signaling, MA, USA), tubulin (3873S, Cell Signaling, MA, USA) antibodies were used. For the detection of the signal from the membranes was used The ChemiDoc XRS+ System (Bio-Rad, USA) and for quantitative analysis of western blots was used Image Lab software (Bio-Rad, USA).
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2

Measuring Ras Signaling Pathway

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The following antibodies used to measure Ras signaling were purchased from Cell Signaling Technology (Danvers, MA): pAkt (Ser473) (D9E) XP (Cat#4060), total Akt (pan) (40D4) (Cat#2920), p-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (D13.14.4E) XP (Cat#4370) and p44/42 MAPK (Erk1/2) (L34F12) (Cat#4696). The following antibodies used to measure housekeeping genes were purchased from Proteintech Group (Rosemont, IL): β-actin (Cat#60008-1-1 g) and GFP-tag (Cat#66002-1-lg; clone #1E10H7). cDNA of human SMPD1 (GenScript, Cat# OHu18710D), SMPD2 (GenScript, Cat# OHu30447D) and SMPD3 (Sino Biological, Cat# HG15755-G) were cloned into GFP-N1 vector. CellLight Lysosomes-RFP (Cat#C10597), Early endosomes-RFP (Cat#C10587), Late Endosomes-RFP (Cat#C10589), Golgi-RFP (Cat#10593), Mitochondria-RFP (Cat#C10601) and ER-tracker (E34250) were purchased from Invitrogen. Altenusin (Cat#SML2193) and GW4869 (Cat#567715) were purchased from MilliporeSigma. Avicin compounds were provided in collaboration with Dr. Jordan Gutterman (MD Anderson Cancer Center; Houston, TX).
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3

MAPK1/3 and RAS Protein Detection

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Cells were lysed with 500 µL RIPA-Lysis buffer supplemented with phosphatase and proteinase inhibitors [53 (link)], and homogenized utilizing a 0.45 × 25 mm needle on a syringe. Debris was removed by centrifugation at 16,100× g for 15 min at 4 °C. Subsequently, 50 µg of protein was applied for Western blotting. For total-MAPK1/3 detection, p44/42 MAPK (Erk1/2) (L34F12) (#4696), and for phospho-MAPK1/3, rabbit anti-Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (D13.14.4E) XP (#4370), from Cell Signaling were used. RAS was detected using pan-RAS (Ab-3) (#OP40) from Merck (Darmstadt, Germany). Protein detection was performed using the Odyssey Sa Infrared Imaging System (LI-COR Bioscience, Lincoln, NE, USA) or enhanced chemiluminescence (ECL, Thermo Scientific, Waltham, MA, USA). ImageStudio (LI-COR) software was employed for quantitative analysis.
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4

Protein Analysis by Western Blotting

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For protein analysis, cells were resuspended in a lysis RIPA buffer (#89901, Thermo, IL, USA) containing Phosphatase (#78426, Thermo, IL, USA) and Protease (#78429, Thermo) inhibitors cocktails at 4 °C, followed by the BCA protein assay (#23225, Thermo, IL, USA). Protein samples were separated electrophoretically by 15% SDS–PAGE and were then transferred to a polyvinylidene difluoride membrane (#ISEQ0001, Sigma-Aldrich, UK). The membranes were incubated with primary and secondary antibodies and then developed with enhanced chemiluminescence (#170–5061, Bio-Rad, CA, USA). The primary antibodies and their dilution factors were the 1 : 1000. For the western analysis, phospho-p44/42 MAPK (T202/Y204) (#4370S, Cell Signaling, MA, USA), p44/42 MAPK (Erk1/2) (L34F12) (#4696S, Cell Signaling, MA, USA), PARP and cleaved PARP (#9542S, Cell Signaling, MA, USA), tubulin (3873S, Cell Signaling, MA, USA) antibodies were used. For the detection of the signal from the membranes was used The ChemiDoc XRS+ System (Bio-Rad, USA) and for quantitative analysis of western blots was used Image Lab software (Bio-Rad, USA).
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