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15 protocols using ab83760

1

Immunohistochemistry of Maxillary Samples

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Maxillae were dissected and fixed in 4% PFA overnight. Samples were decalcified in 19% EDTA until soft enough to cut (~7 days). Processed samples were then dehydrated with 30% sucrose followed by embedding in OCT on dry ice with ethanol. Cryosections were fixed by 4% PFA. Sections were then subject to permeabilisation by 0.2% Triton X-100 (Sigma, X100), heat-induced antigen retrieval, and blocking with 3% BSA. Sections were stained by the following antibodies: anti-RFP (Abcam, Ab62341), anti-CD34 (Abcam, Ab81289 and Ab8158), anti-CD31 (Abcam, Ab7388 and Ab24590), anti-GFP (Abcam, Ab13970), anti-Arg1 (Abcam, Ab92274), anti-Met (Abcam, Ab51067), anti-HGF (Abcam, Ab83760), and anti-Ki67 (Abcam, Ab16667). Secondary antibodies included Alexa Fluor 488 (Invitrogen, A11039), Alexa Fluor 568 (Invitrogen, A11077), Alexa Fluor 633 (Invitrogen, A21052), and Alexa Fluor 488 (Invitrogen, A11008). Tyramide signal amplification (NEL744001KT, PerkinElmer) was performed for weak signals. Hoechst 33342 (Invitrogen 62249, 1:500) was used for DNA staining. Slides were mounted using Citifluor AF1 (EMS, 171024-AF1) and cover-slipped for microscopy. Zeiss Apotome or Leica TCS SP5 systems was used for acquiring images. ImageJ and Adobe Photoshop were used for image processing.
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2

Quantitative Analysis of Kidney Markers

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Samples from kidneys from the 30 mice were prepared for immunofluorescence study which were performed previously [18 (link)]. Briefly, the cryostat sections (4 μm) were incubated with rabbit polyclonal transforming growth factor-beta 1 (TGF-β) antibody (21898-1-AP, Proteintech Group, Inc, IL, USA), rabbit polyclonal matrix metallopeptidase 9 (MMP9) (N-Terminal) antibody (10375-2-AP, Proteintech Group, Inc, IL, USA), or rabbit polyclonal anti-human growth factor (HGF) antibody (ab83760, Abcam, OR, USA) for 30 min at room temperature, and all the primary antibodies were diluted with phosphate buffered saline (PBS) at 1:100. The sections were washed with PBS for three times. Under dark environment, the sections were reacted with tetramethyl rhodamine isothiocyanate (TRITC)-labeled anti-rabbit IgG (T6778, Sigma-Aldrich, Inc., MO, USA) and washed with PBS for three times. The images were de‐convoluted and processed using a laser confocal microscope, Olympus FV500 (Tokyo, Japan). The positive area (red) was quantified using FluoView Olympus version 4.0 (Tokyo, Japan) [18 (link)].
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3

Western blot analysis of neurotrophic factors

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Sciatic nerves were rinsed in cold PBS and lysed on ice in radioimmunoprecipitation assay buffer containing a pro-tease inhibitor cocktail (Pulilai), and the resulting tissue lysates were mixed with sample buffer and boiled at 95°C for 5 minutes. Equal amounts of protein from each sample were subjected to 10–15% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene fluoride membranes (Pulilai). The membranes were blocked in 5% nonfat dry milk at 4°C for 1 hour and incubated with rabbit anti-hepatocyte growth factor (HGF) antibody (1:1000; ab83760, Abcam, Cambridge, UK), rabbit anti-glial cell line-derived neurotrophic factor (GDNF) antibody (1:1000; ab18956, Abcam), rabbit anti-ciliary neurotrophic factor (CNTF) antibody (1:1000; ab46172, Abcam) or rabbit anti-β-actin antibody (1:1000; Proteintech, Chicago, IL, USA) at 4°C overnight. These were followed by the appropriate secondary antibody, donkey-anti-rabbit-HRP (1:5000, Pulilai) at room temperature for 1 hour. The membranes were developed using an enhanced chemiluminescence substrate (Thermo Fisher). Measurement of the protein band intensities was conducted using ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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4

Immunoblotting Analysis of Liver Proteins

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Liver tissues were homogenized and lysed in RIPA containing PMSF (Beyotine). The cellular lysates were clarified by centrifugation at 12,000 rpm for 15 min. Protein concentration in the lysate was determined using the Bradford method. Immunoblotting assays were performed using a standard protocol. Protein samples were resolved by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). Thereafter, the proteins were transferred onto PVDF membranes. After blocking in 5% non-fat milk, the membranes were probed with primary antibodies against TNF-ɑ (ab199013, dilution 1:1000), IL-6 (ab9324, dilution 1:1000), and HGF (ab83760, dilution 1:1000) (Abcam) and GADPH (EMM0215, dilution 1:1000; Elabscience). Protein bands were visualized using an enhanced chemiluminescence method, and analyzed using ImageJ software. Protein expression was normalized against GADPH. The gray ratio of the target bands to that of the internal reference bands was considered the relative expression of the target proteins.
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5

Immunohistochemical Staining of HGF Expression

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Immunohistochemical staining was performed by two-step procedure. Upon rehydration as above, the slides were subjected to antigen retrieval by pressure-cooking for 15 minutes. Endogenous peroxidase activity was neutralized using peroxide block placement on the slides for 10 minutes at room temperature. The slides were then incubated with anti-HGF polyclonal antibody (ab83760, Abcam, Cambridge, MA; diluted 1: 200) at 4°C overnight. This was followed by incubation with peroxidase-conjugated polymer (ChemMate EnVision / HRP; Gene Tech, Shanghai, China) for 30 minutes at room temperature. The chromogen reaction was developed in 3,3′-diaminobenzidine (DAB; Gene Tech, Shanghai, China) tetrahydrochloride for 5 minutes. Finally, hematoxylin was used as a light nuclear counterstain.
The percentage of positive-staining cells were graded on a scale of 0-3, with less than 5% positive-staining cells as grade 0, 5-25% as grade 1, 26-50% as grade 2, and more than 50% as grade 3. The intensity of staining also graded on a scale of 0-2, with negative to weak intensity as grade 0, weak-moderate intensity as grade 1, and moderate to strong intensity as grade 2. Finally, the score of percentage and intensity was multiplied. The final score between 0-2 was determined as low expression, and score higher than 2 was determined as high expression.
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6

Immunofluorescence Analysis of HGF in RA and OA Synovium

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The synovium tissues of knee joints from patients undergoing total knee arthroplasty (5 cases in RA group and 5 cases in OA group) were obtained and fixed with 4% buffered formalin at 4°C for 24 ​hours. The tissues were then transferred to a 30% sucrose solution for 48 ​hours. After that, the samples were embedded with Optimal Cutting Temperature compound (SAKURA, #4583), and cut into 20 ​μm thick sections. The synovium slices were rinsed by PBS for 3 times, and permeabilized with 0.3% Triton X-100 (Amresco, #0694) for 30 ​minutes at room temperature. The slices were then washed with PBS for 3 times again and blocked with bovine serum albumin (Sangon Biotech, #9048-46-8) for 1 ​hours. Afterwards, the samples were incubated overnight at 4°C with rabbit anti-HGF (1:300, Abcam, #ab83760). Following three washes in PBS, the slices were incubated with the corresponding secondary antibodies (1: 400, Abcam, #ab150077) at room temperature for 1 ​hours. Finally, the slices were mounted with fluorescent mounting medium (Dako, #S3023) and examined by a fluorescence microscope (Zeiss Axio Scope A1, Germany).
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7

Immunohistochemical Analysis of Liver Tissue

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Liver tissue was removed and immediately fixed in 10% neutral buffered formalin. It was then embedded in paraffin according to the routine process for light microscopy. The paraffin block was then cut into 4 μm thicknesses by rotary microtome (RM2235, Leica Biosystems, Germany). Antigen retrieval was conducted with sodium citrate buffer (10 mM, pH 6.0) at 95 °C. Heated sections were cooled for 30 min at room temperature. Sections were then incubated in 3% H2O2 (#1146, DUCSAN PURE CHEMICALS, Korea) and incubated in 5% bovine serum albumin (BSA, A7906, Merck KGaA, Darmstadt, Germany). Primary antibodies against Cyclin D1 (ab134175, Abcam plc., UK) and HGF (ab83760, Abcam plc., UK) were added. An HRP-conjugated secondary antibody (Thermo fisher scientific, Waltham, MA, USA) was then added. Immuno-detection was conducted with 3,3′-diaminobenzidine (SIGMAFAST™, Merck KGaA, Darmstadt, Germany). Counter staining was conducted using hematoxylin. All procedures were carried out in a humidified chamber to prevent the drying out of tissues. Tissues were observed using a microscope (CKX53, Olympus, Tokyo, Japan). Counts of positive reacted cells and total cells were measured by the color deconvolution tool within TMARKER (Ver. 2.146, open-source software) [62 (link),63 (link)].
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8

Western Blotting of Extracellular Vesicles and Tissue Proteins

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sEVs extracted above were added to 5×SDS gel loading buffer [30 mM Tris-HCl (pH 6.8), 2% SDS, 0.05% bromphenol blue, 12.5% glycerol, and 2.5% mercaptoethanol] and then boiled for 30 min. Then 20 μg of sEVs were added into each lane on 10% SDS polyacrylamide gels and the mixtures were resolved for Western blotting analysis. The samples were blotted onto PVDF membranes (Millipore, Boston, MA, USA), which were blocked with 5% milk for 1 hour at room temperature and then probed with relevant primary antibodies of CD63 (ab193349, Abcam, Cambridge, MA, USA), GM130 (ab52649, Abcam, Cambridge, MA, USA), and Alix (sc53540, Santa Cruz Biotechnology, Shanghai, China) at 4°C overnight. Subsequently, membranes were reacted with horseradish peroxidase-conjugated secondary antibodies for 1 h at room temperature and observed using the ECL kit chemiluminescence reagents (Millipore, Billerica, MA, USA). Similarly, tissue proteins were isolated from hearts with RIPA lysis buffer and 20 μg of proteins per sample were analyzed using primary antibodies against hepatocyte growth factor (HGF, ab83760, Abcam, Cambridge, MA, USA), vascular endothelial growth factor (VEGF, ab64154, Abcam, Cambridge, MA, USA), and platelet derived growth factor BB (PDGF-BB, ab16829, Abcam, Cambridge, MA, USA). Other procedures were the same as described above.
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9

Histological and Immunohistochemical Analyses

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Bones were fixed in 10% neutral buffered formalin for 48 h, decalcified in 10% EDTA for two weeks and stained with hematoxylin and eosin (HE). Lungs were fixed with Bouin’s solution and the number of metastatic foci was macroscopically counted.
For IHC, bones were fixed, decalcified, embedded in OCT compound and sectioned at 10μm thickness using a cryostat. After blocking, sections were incubated with the primary antibodies overnight at 4°C, and secondary antibodies for 60 min, mounted with coverslips in VECTASHIELD anti-fade mounting medium (Vector Laboraories Inc, Burlingame, CA) and observed under TCS SP8 confocal laser scanning microscope (Leica Microsystems, Nussloch, Germany)
Tumors and DRGs were sectioned at 10μm thickness, and incubated with primary antibodies to CD-31 (1:50, Abcam, #ab28364), DeadEnd Colorimetric TUNEL System (Promega, #G7360, Madison, WI), Ki67 (1:400, Cell Signaling, #9129), PGP9.5 (1:200, Abcam, #ab8189), CGRP (1:200 Abcam, #ab36001), TRPV1 (1:1,000 Abcam, #ab31895), peripherin (1:1,000 Abcam, #ab4666), or HGF (1:200, Abcam, #ab83760) overnight at 4°C, and a secondly fluorescent-labeled antibody (1:100) for 60 min or a streptavidin-biotin complex, EnVision HRP (Dako, Carpinteria, CA), for 60 min and visualized using a 3,3-diaminobenzidine (DAB) substrate-chromogen solution (Dako Cytomation Liquid DAB Substrate Chromogen System).
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10

Western Blot Analysis of Cytokines

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Frozen colon tissues, DPSCs, GFP-DPSCs and HGF-DPSCs were homogenized in lysis buffer containing protease inhibitors. After the lysates were centrifuged at 12,000 rpm for 10 min at 4 °C, the supernatants were collected and the total protein concentration was measured by a BCA protein concentration determination kit (Beyotime, P00125) in accordance with the manufacturer’s instructions. Protein extracts were electrophoresed on 5% SDS-PAGE gels and further transferred to polyvinylidene fluoride (PVDF) membranes. After blocking with 5% skim milk for 1 h, the membranes were incubated with primary antibodies against TNF-ɑ (Santa Cruz Biotechnology, sc-52746, 1:500), TGF-β (Cell Signaling Technology, #3711, 1:500), IL-10 (Abcam, ab33471, 1:1000), IFN-γ (R&D Systems, MAB585, 1:1000), HGF (Abcam, ab83760, 1:500) and β-actin (Abcam, ab8226, 1:1000) at 4 °C overnight. Then, the membranes were washed in TBST three times and incubated with horseradish peroxidase (HRP)-conjugated anti-mouse (Abcam, ab6728, 1:5000) and anti-rabbit IgG (Abcam, ab6721, 1:5000) for 1 h at room temperature. The protein bands were visualized by enhanced chemiluminescence (ECL) solution, and the immunoblotting images were captured by an Omega-Lum G imaging system.
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