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Nucleofector kit 5

Manufactured by Lonza
Sourced in Germany, United States, Switzerland, United Kingdom, France

The Nucleofector Kit V is a laboratory equipment product designed for the transfection of cells. It provides the necessary reagents and protocols to efficiently deliver nucleic acids, such as plasmids or siRNA, into a variety of cell types using the Nucleofector technology.

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135 protocols using nucleofector kit 5

1

Transfection of Jurkat and MT-2 Cells

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Jurkat cells (2 × 106) were transfected in Nucleofector solution (Nucleofector Kit V, program X-01; Amaxa Biosystems) with 2 μM of nonsense siRNA (Qiagen), Bid siRNA (Qiagen) or Bim siRNA (Qiagen) using the Nucleofector apparatus. MT-2 cells were transfected in Nucleofector solution (Nucleofector Kit V, program O-17; Amaxa Biosystems) with 2 μM of nonsense siRNA (Qiagen) or HIF-1α siRNA (Qiagen). Seventy-two hours after transfection, cells were collected for protein expression analysis and different treatments as indicated in the figure legends.
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2

MM.1S Cell Transfection and Analysis

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MM.1S cells were transiently transfected with control scr-siRNA or USP1-siRNA using the cell line Nucleofector kit V (Amaxa Biosystems, Cologne, Germany). Cells were harvested 24h post-transfection, followed by analysis using both immunoblotting and cell viability assays.
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3

CRISPR-Based Rpn13 Knockout in Cell Lines

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We performed CRISPR/Cas9 genome editing to generate Rpn13-knockout (Rpn13-KO) HCT116 and MM.1S cell lines. Cells were transfected with Rpn13-CRISPR/Cas9-knockout (KO) plasmid (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA) using Lipofectamine 2000 (Thermo Fisher Scientific, Waltham, MA, USA) or the cell line Nucleofector Kit V (Amaxa Biosystems, Cologne, Ger-many), respectively. After 48 h incubation, green fluorescent protein (GFP)-positive cells were sorted. Rpn13-KO was confirmed by both protein expression studies and DNA sequencing.
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4

Nrf2 Silencing Impacts M1 Macrophage Polarization

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Short interfering RNAs (siRNAs) were obtained from Dharmacon (Lafayette, CO, USA). THP-1 cells were transfected with human Nrf2 siRNA (L-003755-00-0005) or nontargeting control siRNA (D-001810-10-05), each at a final concentration of 100 nM, using Nucleofector Kit V (Amaxa Biosystems, Cologne, Germany), according to the manufacturer's protocol with slight modifications. Following transfection, the cells were incubated with PMA for 72 hr, collected, lysed in 100 μl lysis buffer (10 mM Tris-HCl (pH 7.4), 50 mM NaCl, 10 mM NaF, 2 mM Na3VO4, 1 mM PMSF, and 1% Triton X-100 with 1/20 v/v Complete), and sonicated for 10 s with an ultrasonic disruptor (Sonifier model 250, Branson Ultrasonics, Danbury, CT, USA). The resulting lysates were subjected to immunoblotting analysis. Nrf2 expression was measured by western blotting as above, with β-actin as the loading control. Detected bands were scanned, and intensities of chemiluminescence signals were quantified by ImageJ software. PMA-differentiated siRNA-transfected cells were further polarized into M1 macrophages in the presence or absence of propofol (50 μM), and IL-6, IL-1β, and TNF-α concentrations in supernatants were measured by ELISA.
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5

Modulating SOD1 Expression in Bortezomib-Resistant Myeloma

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MM.1S and bortezomib-resistant ANBL6-BR cells were transiently transfected with scrambled (scr)-siRNA or SOD1-siRNA ON-TARGET plus SMART pool siRNA (Dharmacon, Inc. Lafayette, CO) using the cell line Nucleofector Kit V (Amaxa Biosystems, Cologne, Germany). pcDNA3.1 control vector and SOD1-WT (addgene, #26397) were transfected as above. Cells were harvested 24 h post transfection, followed by analysis using both immunoblotting and cell viability assay.
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6

Silencing CDK5 in RPMI 8226 Cells

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RPMI 8226 cells were transiently transfected with genome scramble-siRNA or siRNA against CDK5 (Smart pool siRNA; GE Healthcare Dharmacon, Inc.) using Nucleofector kit V in accordance with the manufacturer's protocol (Amaxa Biosystems). CDK5-siRNA was designed with Block-iT RNAi Designer (Invitrogen; Thermo Fisher Scientific, Inc,) and synthesized (Wuhan GeneCreate Biological Engineering Co., Ltd.). The sequences of CDK5-siRNA were 5′-CCT TAT AGT CTG GCA GCT T-3′ and the scramble shRNA sequences were 5′-CCT ATT GTC GGA CGT ACT T-3′. After 48 h of transfection with 100 nM siRNA (shRNA 10 pmol/sample), the cells were collected for CDK5 expression and cell viability detection.
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7

CRISPR-Mediated APRIN Knockout

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Guide RNA sequences were designed using CRISPR Design Tool (http://tools.genome-engineering.org). Two strategies with two gRNA designed to produce a genomic deletion were used, either targeting exon 3 (for a 54 bp deletion) or exon 4 and exon 6, producing a 964 bp DNA deletion (See Table 6 for sequences). Each gRNA sequence and their complement were ligated in pX458 (pSpCas9(BB)-2A-GFP, Addgene #48138). Cells were cotransfected with the two guides in pX458 by electroporation using nucleofector kit V (Amaxa) following the manufacturer's protocol. Single GFP positive cells were sorted in 96-well plates 24 h post-transfection. DNA from the resulting clones was extracted with DirectPCR (cell) (Viagen) + Proteinase K (Biobasic) following the manufacturer's protocol. APRIN knock-out clones were identified by PCR using primers listed in Table 7. Knock-out clones were confirmed by western blot using rabbit anti-PDS5B antibody.
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8

Engineered Colorectal Cancer Cell Lines

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Human colorectal cancer cell lines were cultured in Dulbecco's MEM (DMEM; Invitrogen) supplemented with 10% heat-inactivated fetal calf serum (FBS; HyClone). Cell lines (RKO, SW480, and HCT116) were purchased from ATCC (LGC standards). No authentication was done by the authors. Full-length FOXE1 cDNA was subcloned into the pIRES-neo3 expression vector (Clontech Laboratories Inc.). GFP-SYNE1 and GFP-SYNE1-KASH (Klarischt) were kindly provided by Dr. Zhang (Department of Medicine, Cambridge, United Kingdom).
HCT116 cells were transfected with the Nucleofector Kit V (Amaxa Biosystems) and RKO and SW480 cells were transfected using Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer's protocol. HCT116, RKO, and SW480 cells were transfected with a control construct (empty vector) or FOXE1-pIRESneo3, GFP-SYNE1, and GFP-SYNE1-KASH, selected for 10 days with G418 (HCT116 and SW480 400 µg/mL; RKO 1 mg/mL).
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9

Transgelin2 Modulation in Jurkat T Cells

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Jurkat T cells were transiently transfected with cDNAs encoding GFP-tagged transgelin2 by Nucleofector Kit V (Amaxa) according to manufacturer’s instructions and then selected with 1 mg/mL Geneticin. Jurkat T cells (TIB-152, American Type Culture Collection) transfected with GFP-tagged transgelin2 were grown in RPMI 1640 medium supplemented with 10% FBS and 1% penicillin/streptomycin at 37°C. Jurkat T cells expressing GFP-tagged transgelin2 were grown to confluence and then subjected to serum deprivation for 18 h. These cells were subjected to each of the following treatment conditions. No-activation condition samples were untreated or treated with 100 nM calyculin A (LC Laboratories), or 1 μM okadaic acid for 30 min prior to cell harvest. PKA activation condition was induced by 100 nM forskolin and PKC activation was induced by 200 nM phorbol 12-myristate 13-acetate (PMA) for 30 min. Two protein kinase activation condition samples were then treated with 100 nM calyculin A for 30 min prior to cell harvest.
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10

Efficient siRNA Transfection in MSCs

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siRNA specific for mouse OPN and control siRNA with scrambled sequences were purchased from Dharmacon (Lafayette, CO, USA). In each transfection, 5 μl siRNAs (100 pM) were introduced into MSCs (1.5×106 cells) using the Amaxa Nucleofector device, with program U-023 and Nucleofector kit V (Amaxa, Cologne, Germany). The efficiency of transduction was determined for a control plasmid containing enhanced green fluorescent protein (eGFP) cDNA (Pmax, part of Nucleofector kit), for which the expression of eGFP was evaluated by flow cytometry and fluorescence microscopy, typically resulting in >90% efficiency.
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