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14 protocols using stable glutamine

1

Cell culture and macrophage activation

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Human epithelial cell line HeLa were maintained in DMEM containing 4.5 g x l-1 glucose, 4 mM L-glutamine and sodium pyruvate (Biochrom) supplemented with 10% fetal calf serum (FCS) in an atmosphere of 5% CO2 and 90% humidity at 37°C. The murine macrophage cell line RAW264.7 (ATCC no. TIB-71) were cultured in DMEM containing 4.5 g x l−1 glucose and 4 mM stable glutamine (Biochrom) supplemented with 6% FCS. For activation of RAW264.7, cells were cultured in medium with 5 ng x ml-1 murine IFN-γ (R&D Systems) for 24 h prior to infection. The efficacy of activation was routinely confirmed by analyses of macrophages oxidative burst.
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2

Cell Line Characterization and Validation Protocol

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A673 and HEK293T cells were purchased from American Type Culture Collection (ATCC). MHH-ES1, RDES, RH1, SK-ES1, and SK-N-MC cells were provided by the German Collection of Microorganisms and Cell  Cultures (DSMZ). TC-32, TC-71, and CHLA-10 cells were kindly provided by the Children’s Oncology Group (COG) and EW1, EW3, EW7, EW16, EW17, EW18, EW22, EW23, EW24, LAP35, MIC, ORS, POE, STA-ET1, STA-ET8 cells were provided by O. Delattre (Institute Curie, Paris). A673/TR/shEF1 cells were kindly provided by J. Alonso (Madrid, Spain)35 (link). The SK-N-MC cell line is listed in the database of commonly misidentified cell lines, ICLAC (http://iclac.org/databases/cross-contaminations), as it was initially described to be a neuroblastoma cell line. Indeed, it is a EwS cell line expressing the pathognomonic fusion oncogene EWSR1-FLI1. All cell lines were grown in humidified atmosphere at 37 °C and 5% CO2. Cells were cultured in RPMI 1640 medium supplemented with stable glutamine (Biochrom), 10% tetracycline-free FCS (Sigma-Aldrich), 100 Uml−1 penicillin (Biochrom), and 100 µg ml−1 streptomycin (Biochrom). Cells were routinely checked by nested PCR for mycoplasma infection, and their purity was confirmed by STR-profiling and, if applicable, by PCR-based detection of specific fusion oncogenes.
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3

Adaptation of Breast Cancer Cell Lines to Tamoxifen

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MCF-7 cells were obtained from American Type Culture Collection (ATCC, via LGC Standards, Wesel, Germany) and maintained in phenol-red-free Roswell Park Memorial Institute medium 1640 (RPMI 1640), supplemented with 10% fetal bovine serum (FBS) and stable glutamine (Biochrom, Berlin, Germany). For tamoxifen adaption, 10 nM of 4-OH-tamoxifen (Sigma-Aldrich, Taufkirchen, Germany) was added in a 1:10,000 dilution from a 100 µM stock solution in ethanol. After 12 weeks, cells were washed three times with cold phosphate buffered saline (phosphate 12.5 mM, NaCl 137 mM, KCl 2.7 mM, “PBS”) and harvested in RNA-lysis buffer (Macherey-Nagel, Düren, Germany) as part of the nucleospin miRNA preparation kit. Generation of MCF-7 Tam cells was described earlier [32 (link),33 (link)]. Further cell lines representing major breast cancer subtypes (luminal A: T47D; HER2-overexpressing: SK-BR-3; triple negative: MDA-MB-231, Hs578T (mesenchymal-like “MSL”), MDA-MB-468 (basal-like 1 “BL1”); BRCA-methylated: UACC3199) were obtained from ATCC and grown under the same conditions as MCF-7.
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4

Hormone Receptor-Positive Breast Cancer Cell Culture

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MCF-7 cells were chosen for their hormone receptor-positive attributes, reflecting the luminal breast cancer subtype. Their estrogen and progesterone receptor presence aligns with our hormone-related focus. Our selection was guided by their relevance to our objectives, well-documented status, and specific interest in MTE's impact on this hormone receptor-positive subtype. Additionally, our choice of MCF-7 cells was influenced by the existing data on green tea phenol's interaction with ERα, while information about ERβ interactions remains limited.
MCF-7 cells were cultured on an 80% monolayer in a cell culture bottle. Dulbecco's modified Eagle medium (DMEM; 3.7 g/l NaHCO3, 4.5 g/l d-glucose, 1.028 g/l stable glutamine, and sodium pyruvate; Biochrom, Berlin, Germany) supplemented with 10% heat-inactivated fetal calf serum (FCS; Biochrom, Berlin, Germany) was used for cultivation. The cells were incubated with atmospheric concentrations of CO2 of 5% at 37 °C and were then trypsinized and counted for further use.
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5

Trophoblast Cell Line Stimulation Assay

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The choriocarcinoma cell lines BeWo (ECACC, Salisbury, UK) and JEG-3 (ATCC), which are useful models of human trophoblasts, were used for the study. The cells were cultured in DMEM (3.7 g/L NaHCO3, 4.5 g/L d-glucose, 1.028 g/L stable glutamine, and Na-Pyruvate; Biochrom, Berlin, Germany). 10% heat-inactivated FCS was added to the medium, and the solution was incubated at an atmospheric CO2 concentration of 5% and at 37°C.
BeWo and JEG-3 cells were separately grown on sterile 12 multiwell slides at a density of 500,000 cells/mL DMEM with 10% foetal cow serum. After 4 h, medium was changed to pure DMEM. The cells were stimulated with 0.01 nM or 0.1 nM triiodothyronine (T3) (Sigma T2877; Lot:106K1157V, Sigma-Aldrich), thyronamine (T0AM) (Fluka 80345, Lot: BCBL2185V, Buchs, Switzerland), 3-Iodothyronamine (T1AM) (Cayman Chemical) and RO5203548 (Glixx Laboratories, Hopkinton, MA, USA) for 2 h (PCR samples) and 48 h (Immunocytochemistry and Western blot samples), respectively. Control cells were incubated without stimulants. As a control solvent, the following buffers were used: The stimulant T3 has been diluted in 1 M NaOH in DMEM (Dulbecco’s Modified Eagle Medium) and T1AM and RO5203548 were diluted in DMSO (Dimethylsulfoxide).
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6

Purification and Culture of Murine T Cells

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gp91phox−/− mice were a kind gift from Dr. Katrin Breitbach (Friedrich Loeffler Institute of Medical Microbiology, Ernst-Moritz-Arndt University, Greifswald). Wild type control C57BL/6JBom mice were obtained from Taconics. Mice were kept in pathogen-free conditions (SPF). Spleens from mice were passed through a fine mesh filter (BD Falcon) to obtain a single-cell suspension. T cells were purified by non-T cell depletion using mouse pan T-cell isolation kit and AutoMACS (all from Miltenyi Biotec). Purity of T cells, determined by flow cytometry, was routinely more than 96%. The cells were cultured at 106 cells/ml, 37°C and 5% CO2 in RPMI 1640 medium supplemented with stable glutamine (Biochrom AG), 10% fetal calf serum PAN Biotech), 2 μg/ml ciprobay (Bayer) and 50 μM β-mercaptoethanol (Sigma Aldrich).
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7

Thyroid Hormone Signaling in Breast Cancer

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Ductal breast cancer cell lines MCF7 and T47D (both ECACC, Salisbury, UK) were used for the experiments. The cells were cultured in DMEM (3.7 g/L NaHCO3, 4.5 g/L d-glucose, 1.028 g/L stable glutamine, and Na-pyruvate; Biochrom, Berlin, Germany) adding 10% heat-inactivated fetal calf serum (FCS; Biochrom) to the medium, and the solution was incubated at an atmospheric CO2 concentration of 5% and at a temperature of 37°C.
For the PCR and Western blot stimulation, MCF7 and T47D cells were separately grown on sterile 12 multiwell slides at a density of 500,000 cells/mL DMEM with 10% FCS. Medium was changed after 4 hours to pure DMEM without FCS. After 16 hours, each group of cells was stimulated with 0.01 or 0.1 nM T1AM (Cayman Chemical, Ann Arbor, USA), T3 (Sigma-Aldrich Co., St Louis, MO, USA), and tetraiodothyroacetic acid (Tetrac) (Sigma-Aldrich Co.) for 2 hours in case of TaqMan® PCR experiments. For Western blot lysates, each group of cells was stimulated with 1 or 10 nM T1AM, T3, and Tetrac for 24 hours. 10 µg/mL of estradiol (Sigma-Aldrich Co.) was added to T47D cells, which were stimulated with 10 nM T1AM.
Control cells were incubated under the same conditions without stimulants.
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8

Breast Cancer Cell Line Stimulation Assay

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The cell lines MCF7 and T47D were used as models for the ductal breast carcinoma. The cells were cultured in DMEM (3.7 g/L NaHCO3, 4.5 g/L D-glucose, 1.028 g/L stable glutamine, and Na-Pyruvate; Biochrom, Berlin, Germany). After adding 10% heat-inactivated fetal calf serum (FCS; Biochrom) to the medium the solution was incubated at an atmospheric CO2 concentration of 5% and at 37 °C in an incubator to lyse.
MCF7 and T47D cells were separately grown in sterile 12 multi-well slides at a density of 500,000 cells/mL DMEM with 10% FCS. The medium was changed after 4 h to pure DMEM without any FCS. After 20 h, the cells were stimulated with 1 μM epinephrine (Sigma-Aldrich Chemie GmbH, Munich, Germany). The cells were stimulated for 6 h with 10 μM epinephrine in the case of Western blot samples. Control cells were incubated in parallel without any stimulants.
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9

Analyzing Epithelial Barrier Function

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We used IPEC-J2 cells (DSMZ, Braunschweig, Germany), a non-transformed cell line that stems from porcine jejunal epithelia, to analyze whether the changes in epithelial barrier function in PP tissue also occur in a cell culture model. Cells were seeded on semi-permeable cell culture inserts (Millipore, Darmstadt, Germany) at 105 cells per filter. Dulbecco’s MEM/Ham’s F12 with 3.15 g/L glucose and 2 mM stable glutamine (Biochrom, Berlin, Germany) was used and supplemented with 10% porcine serum and 1% penicillin/streptomycin (Sigma Aldrich, Munich, Germany). Medium was changed every 2–3 days, and filters were filled with 500 μl apically and 1 ml basolaterally. By using a chopstick electrode and an epithelial Volt/Ohm Meter (EVOM, World Precision Instruments, Sarasota, FL, United States), we measured the TER immediately before each media exchange, and values were corrected with the media and blank values used in our experimental settings. Once the cells had built up a confluent monolayer, resulting in consistent TER values, the incubation experiments were started. We added 5000 U/ml TNF (PeproTech, Hamburg, Germany) to the basolateral side of the cell filters, and TER was recorded for up to 10 h. Cell passages between 8 and 13 were used for experiments.
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10

Culturing T47D Breast Cancer Cells

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To mimic ductal breast carcinoma, the T47D cell line was used. Cells were grown on 80% monolayer in a cell culture bottle and cultivated in Dulbecco's Modified Eagle Medium (DMEM; 3.7 g/L NaHCO3, 4.5 g/L d-glucose, 1.028 g/L stable glutamine, and sodium pyruvate; Biochrom, Berlin, Germany). Then 10% heat-inactivated fetal calf serum (FCS; Biochrom) was added to the medium and incubated with atmospheric concentrations of CO2 of 5% at 37 °C. For further use they were trypsinized and counted.
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