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279 protocols using diphtheria toxin

1

Diphtheria Toxin-Mediated Ablation of LysM+ Cells

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Diphtheria toxin (Sigma; 322326) was dissolved in commercially available PBS to a concentration of 5 and 1 ng/µL. The toxin was then intraperitoneally injected once a day for 10 days, killing only the LysM+ cells expressing the inducible Diphtheria toxin receptor, as previously reported [5 (link)]. For the first 3 days, mice were injected at a dose of 25 ng/g of mouse weight. For the remaining 7 days, the dose was reduced to 5 ng/g. This protocol was adapted from a published protocol [32 (link), 68 (link)]. The time schedule of all treatments is shown in Fig. 1. The study protocol utilized four groups of age-matched male LysMCreiDTR mice. Control (CTR, no noise exposure and no DTX treatment.), Noise (4 days of noise exposure), DTX (10 days of Diphtheria toxin treatment), and DTX + Noise (10 days of DTX treatment and 4 days of noise exposure).

Scheme for ablation of LysM+ cells and noise exposure. Male LysMCre+/− iDTR+/− (LysMCreiDTR) mice were acclimatized to blood pressure measurement and baseline measurements were taken prior to treatment with Diphtheria toxin. DTX was administered daily via i.p. injection for 10 days, first at a dose of 25 ng/g and then reduced to a dose of 5 ng/g. On day 6, after sufficient ablation, mice were exposed to aircraft noise for 4 days. Created with BioRender.com

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2

Depletion of CD11b+ cells in mice

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Eight- to 10-week-old wild-type (WT) C57BL/6 (B6, H2b) mice were purchased from Charles River Laboratories (Wilmington, Mass). MC−/− (WBB6F1/J-KitW/KitW-v/J [KitW/KitW-v] and KitW-sh/HNihrJaeBsmJ [kitWsh/KitWsh]), MHC class II−/− (B6.129S-H2dlAb1-Ea), Wiskott-Aldrich syndrome protein (WASP)−/− (B6.129S6-Wastm1Sbs/J), and CD11b-DTR (B6.FVB-Tg[ITGAM-DTR/EGFP]34Lan/J) mice were purchased from Jackson Laboratory (Bar Harbor, Me). Recombination-activating gene 2 (Rag2)−/− γc−/− (B10; B6-.Rag2tmlFwaII2rgtm1Wjl), Rag2−/− , and 5C.C7 Rag2−/− mice (both on B10.A background) were purchased from Taconic Biosciences (Albany, NY). For CD11b+ cell depletion with diphtheria toxin treatment, CD11b-DTR transgenic mice weighing 25 to 30 g were injected with diphtheria toxin (25 ng/g body weight; Sigma-Aldrich, St Louis, Mo) 24 hours before and 72 hours after beginning NAD+ or PBS administration.
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3

PANC-1 Carcinoma Cell Culture

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PANC-1 has been generated from a human carcinoma of the exocrine pancreas in 197529 (link), and was purchased from American Type Culture Collection (ATCC, Rockville, MD, USA). PANC-1 cells were maintained in Dulbecco’s modified Eagle’s medium (DMEM, Invitrogen, Carlsbad, CA, USA) supplemented with 15% fetal bovine serum (FBS; Sigma-Aldrich, St Louis, MO, USA) in a humidified chamber with 5% CO2 at 37 °C. Diphtheria toxin (DT, Sigma-Aldrich) was freshly prepared and given to the cultured cells at a concentration of 40 nmol/l to specifically eliminate cells expressing diphtheria toxin receptor (DTR).
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4

Genetically Ablating Starburst Amacrine Cells

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To genetically ablate starburst amacrine cells, we used Rosa-iDTR (+/−) × ChAT-IRES-Cre mice and control Rosa-iDTR (−/−) × ChAT-IRES-Cre mice (Figures S3A and S3B). Diphtheria toxin stock solution was made from Diphtheria toxin (D0564, Sigma), which was dissolved in PBS (1 μg/μl), and stored at −80°C. Immediately before the injection, the injection solution (1 ng/μl) was prepared by diluting the stock solution in PBS. First, we subretinally injected AAV-8BP/2-shortCAG.SF-iGluSnFR.A184S-WPRE-SV40p(A) to target T7 and T2 bipolar cells for glutamate imaging. Nine days later, 2 μl Diphtheria toxin was intravitreally injected into each of both eyes. The eyes were re-injected with the same amount of Diphtheria toxin two days after the initial injection.
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5

Depletion and Checkpoint Blockade in Mice

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Mice were injected with 1 mg tamoxifen (Sigma) each day for 4 consecutive days. For diphtheria toxin-mediated cell depletion, 100 μg·kg−1 of diphtheria toxin (Sigma) were injected intraperitoneally as indicated in the appropriate figure legends.
To deplete CD4+-TLs, mice were injected intraperitoneally with 250 μg anti-CD4 (clone GK1.5) or 250 μg isotype-matched control antibody (Rat IgG2b (clone LTF-2; both from BioXcell)) on Day 3 and Day 1 before tumour inoculation.
For immune checkpoint blockade therapy, 125 μg anti-CTLA-4 (clone 9D9) and 125 μg anti-PD-1 (clone RMP1-14), or the same amount of isotype-matched control antibody (mouse IgG2b (clone MPC-11) and rat IgG2a (clone 2A3; all from BioXcell)) were delivered into mice intraperitoneally on Day 1 and Day 8 post-tumour inoculation.
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6

Depletion and Checkpoint Blockade in Mice

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Mice were injected with 1 mg tamoxifen (Sigma) each day for 4 consecutive days. For diphtheria toxin-mediated cell depletion, 100 μg·kg−1 of diphtheria toxin (Sigma) were injected intraperitoneally as indicated in the appropriate figure legends.
To deplete CD4+-TLs, mice were injected intraperitoneally with 250 μg anti-CD4 (clone GK1.5) or 250 μg isotype-matched control antibody (Rat IgG2b (clone LTF-2; both from BioXcell)) on Day 3 and Day 1 before tumour inoculation.
For immune checkpoint blockade therapy, 125 μg anti-CTLA-4 (clone 9D9) and 125 μg anti-PD-1 (clone RMP1-14), or the same amount of isotype-matched control antibody (mouse IgG2b (clone MPC-11) and rat IgG2a (clone 2A3; all from BioXcell)) were delivered into mice intraperitoneally on Day 1 and Day 8 post-tumour inoculation.
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7

Bleomycin-Induced Lung Injury Model

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Mice underwent intraperitoneal injection with 0.018 U·g−1 bleomycin (Thermo Fisher Scientific) or vehicle (PBS) twice weekly for 4 weeks (Pi et al., 2018 (link)). For diphtheria toxin studies, mice were injected intraperitoneally for three consecutive days with 100 ng of diphtheria toxin (Sigma Aldrich) before initiation of bleomycin protocol, with PBS injection used as control (Goren et al., 2009 (link)), and twice weekly thereafter. Euthanasia and data collection are performed 5 days after final injection of animal with vehicle or experimental agent (diphtheria toxin and bleomycin), Day 33 of the intraperitoneal bleomycin injection protocol. Anti‐PD‐L1 (500 μg, intraperitoneally) and rat IgG2b, both purchased from BioXcell, were administered on Day 0 and then once weekly for three additional doses (Celada et al., 2018 (link)) throughout bleomycin exposure.
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8

Bleomycin-Induced Lung Fibrosis Model

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Mice underwent intraperitoneal injection with 0.018 U/g bleomycin (Thermo Fisher Scientific) or vehicle (PBS) twice weekly for 4 weeks (Pi et al., 2018 (link)). For diphtheria toxin (DT) studies, mice were injected intraperitoneally for three consecutive days with 100 ng of diphtheria toxin (DT; SigmaAldrich) before initiation of bleomycin protocol, with PBS injection used as control (Goren et al., 2009 (link)), and twice weekly thereafter. Euthanasia and data collection are performed five days after final injection of animal with vehicle or experimental agent (DT and bleomycin), day 33 of the intraperitoneal bleomycin injection protocol. Anti-PD-L1 (500 μg, intraperitoneally) or rat IgG2b, both purchased from BioXcell, were administered on Day 0, then once weekly for three additional doses (Celada et al., 2018 ) throughout bleomycin exposure.
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9

Neutrophil Depletion for Candida Infection

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Neutrophil depletion with diphtheria toxin: PMNWT and PMNDTR mice were i.p. injected with 500 ng of diphtheria toxin (Sigma) one day before and on the day of infection with C. albicans.
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10

Treg Depletion in Melanoma Brain Tumor

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All animal studies were approved by the Institutional Animal Care and Use Committee (IACUC) at the University of Wisconsin-Madison (Madison, WI). Female mice (C57BL/6) were purchased at 6-to-8 weeks of age from Taconic Biosciences, Inc. (East Greenbush, NY) and used for all experiments. Mouse experiments were repeated in two or more independent trials with at least 4 animals per treatment group in each trial; aggregate number of animals (n) is indicated. C57BL/6-Tg (Foxp3 DTR/EGFP) 23.2 Spar/Mmjax “DEREG” mice were purchased from the Jackson Laboratory (MMRRC; Bar Harbor, ME). Treg depletion with diphtheria toxin was achieved following a prior methodology, as reported elsewhere (13 (link), 27 (link), 30 (link)) by daily intraperitoneal (i.p.) injection of 1 μg diphtheria toxin (MilliporeSigma, St. Louis, MO) diluted in PBS for 2 days at day 14 and 15 postirradiation, to ensure presence of melanoma brain tumor prior to Treg depletion. We have previously demonstrated Treg depletion >40% knockdown by day 3 (1 day after completion of two DT injections of 1 μg) (13 (link)), with previously reported studies indicating >90% depletion by day 7 (31 (link)). At euthanasia, mice were dissected and grossly examined for brain tumor to verify no confounding effect of Treg depletion on autoimmunity and subsequent mortality (31 (link)).
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