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29 protocols using krebs henseleit buffer

1

Isolation of Mouse Hepatocytes

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Livers of anesthetized mice were perfused by inserting a 22-gauge syringe into the portal vein and delivering 25 ml of pre-warmed (37 °C) perfusion buffer [Krebs–Henseleit buffer (Sigma) with 0.5 μM EDTA], followed by 25 ml collagenase A buffer [Krebs–Henseleit buffer, with 0.1 mM Ca2Cl and 0.4 mg/ml collagenase A (Sigma)]. After perfusion, livers were transferred to a Petri dish, flooded with cold PBS, and hepatocytes were gently released using forceps. Dissociated cells were collected and filtered through a 100 μm cell strainer. Cells were centrifuged at 100 × g for 5 min at 4 °C to obtain hepatocyte-enriched cells. Pellets were resuspended in cold PBS, filtered through a 40 μm cell strainer, and centrifuged at 100 × g for 5 min at 4 °C. Percoll diluted in 10× Hank’s buffer (Sigma) was added to the cell suspension and centrifuged at 100 × g for 5 min at 4 °C. The supernatant containing dead cells was removed by aspiration. The pellet was resuspended in cold PBS, and cell number and viability were determined.
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2

Hepatocyte Incubation Assay Protocol

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Fifty microliters of prewarmed
hepatocytes (2 × 106 cells/mL) in suspension media
(Krebs–Henseleit buffer (Sigma-Aldrich) containing 5.6 g/L
HEPES) was mixed with 50 μL of prewarmed compound dosing solution
(2 μM in Krebs–Henseleit buffer with 1% DMSO). After
incubating at 37 °C for 15, 30, 60, or 120 min, 100 μL
of acetonitrile containing internal standard was added to quench the
reaction. For 0 min incubation, acetonitrile was mixed with hepatocytes
first before adding the compound solution. After quenching, the mixture
was shaken at a vibrator for 10 min (600 rpm/min) and then sonicated
for 2 min before centrifugation (5594g for 15 min).
The supernatant was taken and diluted for LC-MS analysis.
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3

Synthesis of GNE Pyrazole Compounds

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GNE1, N2-(((1r,4r)-4-aminocyclohexyl)methyl)-5-chloro-N4-(5-cyclopropyl-1H-pyrazol-3-yl)pyrimidine-2,4-diamine; GNE2, N2-(((1r,4r)-4-aminocyclohexyl)methyl)-N4-(5-cyclo-
propyl-1H-pyrazol-3-yl)pyrimidine-2,4-diamine; GNE3, 2-(4-aminopiperidin-1-yl)-N-(5-cyclopropyl-1H-pyrazol-3-yl)
thieno [3 (link),2-d]pyrimidin-4-amine; and the N-acetylated metabolite of GNE1 (GNE4), N-((1r,4r)-4-(((5-chloro-4-((5-cyclopropyl-1H-pyrazol-3-yl)amino)pyrimidin-2-yl)amino)
methyl)cyclohexyl)acetamide were synthesized in-house (supplemental method). Acetyl coenzyme A (acetyl-CoA) sodium salt, 1-aminobenzotriazole (ABT), bovine serum albumin, ethylenediaminetetraacetic acid (EDTA), indomethacin, ketamine/xylazine HCl solution, Krebs-Henseleit buffer, labetalol, loperamide, and polyethylene glycol (PEG400) were purchased from Sigma-Aldrich (St. Louis, MO). Tetrasodium salt of NADPH was obtained from EMD Millipore (Billerica, MA). All other reagents and solvents of highest quality were purchased from commercial vendors.
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4

Isolation of Cardiac Fibroblasts from Rats

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Adult Sprague Dawley rats (n = 8 male: 8 weeks, 265 g; and n = 8 female: 12 weeks, 255 g) were euthanized and hearts were removed and collected in Krebs-Henseleit buffer (Sigma, St. Louis, MO, USA). All procedures were performed with approval from Clemson University’s Institutional Animal Care and Use Committee (protocol AUP 2019-048). Ventricles were minced and digested to isolate CFs according to previously reported protocols [25 (link),26 (link)]. Liberase TM (Roche, Indianapolis, IN, USA) was used in each of the six successive enzymatic digestions at 37 °C. Supernatants from each digestion were collected and centrifuged at 300× g and 4 °C and resuspended in Dulbecco’s Modified Eagle’s Medium (DMEM, Sigma) containing 10% fetal bovine serum (FBS, Atlanta Biologicals, Flowery Branch, GA, USA), 100 U/mL penicillin G, 100 µg/mL streptomycin, and 1 ng/mL amphotericin B (all Sigma). Following isolation, cells were plated in T-25 culture flasks and incubated at 37 °C and 5% CO2 for 4 h after which media was changed and, thereafter, was changed every 72 h until the serum starvation.
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5

Isolation and Culture of Murine Primary Hepatocytes

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Murine primary hepatocytes were isolated as described earlier (Malhi et al., 2006 (link); Dasgupta et al., 2020 (link)). Briefly, a 2-step collagenase perfusion technique was performed. After in situ perfusion of the liver with a calcium-free HBSS medium (Corning, Corning, NY, United States) followed by a collagenase D (Roche, Indianapolis, IN, United States) solution in HBSS medium with calcium and magnesium (Corning, Corning, NY, United States), livers were excised and minced in Krebs-Henseleit buffer (Sigma-Aldrich, St. Louis, MO, United States). Dispersed cell suspensions were purified by Percoll solution (Sigma). The hepatocytes were cultured in Dulbecco’s modified Eagle’s medium (DMEM, Life Technologies) containing 10% fetal bovine serum and 1% penicillin/streptomycin (Gibco) in collagen coated plates, prepared with Collagen coating solution (Sigma-Aldrich, St. Louis, MO, United States). Approximately, 2.5×106 cells were plated in 10 cm dishes, 1.5×106 cells were plated in 60 mm dishes, and 750,000 cells per well in 6-wells plates.
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6

Pulmonary Vascular Reactivity to Vasoactive Agents

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The effect of vasoconstrictor (Endothelin-1) and vasodilator (treprostinil) on pulmonary vascular tone was tested in de-epithelialized (n = 3) and control (n = 3) rats. Heart-lung blocks were mounted on EVLP and mechanically ventilated, as described above. Lungs were perfused with a modified Krebs-Henseleit buffer (Sigma-Aldrich) with the addition of 1% fetal bovine serum, 4% dextran (70 kDa), and heparin (10 IU/ml). Buffer was continuously gassed with 95% CO2/5% O2 at 37°C to maintain pH 7.4. Endothelin-1 (20 nM; Sigma-Aldrich) was intravenously given into the PA cannula (52 (link)). PA pressure was continuously recorded, as previously described, to assess the changes in PA pressure. Infusion was stopped when 100% increase in PA pressure was achieved. Treprostinil (0.3 μM; United Therapeutics) was started, and infusion was stopped when 20% relaxation was recorded (53 (link)). Data were expressed as the percent change relative to the baseline pressure (mean ± SEM) during induced response to Endothelin-1 and teprostinil infusions.
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7

Soleus Muscle Leptin Signaling Assay

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Soleus muscles were isolated from male mice 16 h after food removal and transferred to a 12-well plate containing 2 ml of Krebs-Henseleit buffer, pH 7.4 (Sigma-Aldrich, St. Louis, MO) with 2 mmol/L pyruvate, 8 mmol/L mannitol, and 0.1% BSA, as previously described [26 (link)]. Muscles were incubated for 15 min in this buffer before replacing with the buffer containing leptin (300 ng/mL). Muscles were collected at the indicated time points and lysates were prepared. Briefly, muscles were homogenized in ice-cold RIPA buffer containing commercially available protease and phosphatase inhibitor cocktails (Roche) using glass teflon homogenizer. Protein content in lysates was measured by the bicinchoninic acid method (Pierce) and subject to immunostaining for detection of phospho- and total-STAT3.
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8

Time-dependent OAT1-mediated Intracellular IS Uptake

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To determine the time-dependent OAT1-mediated intracellular uptake of IS, mature monolayers of ciPTECs-OAT1 were incubated with IS (25, 50, 100, and 500 μM prepared in Krebs–Henseleit buffer (Sigma-Aldrich, Zwijndrecht, The Netherlands) supplemented with HEPES (10 mM, Sigma-Aldrich, Zwijndrecht, The Netherlands, pH 7.4) for variable periods of time. Uptake was stopped by washing one time with ice-cold HBSS (Life Technologies Europe BV, Roskilde, Denmark), and then, the cells were lysed by 100 µL 0.1M NaOH for 10 min at room temperature and under mild shaking. The intracellular IS concentration was determined in the cell lysate by LC-MS/MS, as described below.
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9

Muscle Dissection and Adiponectin Treatment

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Each muscle was carefully dissected into longitudinal strips from tendon to tendon using a 27-gauge needle. Following dissection, the gastrocnemius muscle was separated into red and white muscle and snap-frozen in liquid nitrogen for subsequent measurement of citrate synthase activity. Immediately after their removal the longitudinal strips of the soleus and EDL were incubated in an oxygenated organ bath (37 °C pre-gassed at 95% O2 −5% CO2). Each longitudinal strip was placed in an individual chamber of Krebs-Henseleit buffer (Sigma-Aldrich, St. Louis, MO, USA) with 0.1 µg/mL of adiponectin (Sigma-Aldrich, St. Louis, MO, USA) or the contralateral hind limb muscle exposed to Vehicle for 30 min. Muscle strips were taken from opposing limbs from each animal to ensure that alternate muscles were exposed to the treatment. Following incubation, the muscle samples were snap frozen in liquid nitrogen and stored at −80 °C for further analyses.
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10

Prolonged Human Pancreas Preservation

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Discarded human pancreases were made available to the clinical team on two occasions. The same protocol was used as described for the porcine pancreases. Each pancreas was stored on ice before being subjected to 5 hours of HMP with in-house Belzer-UW solution, followed by 2 hours of reperfusion with warm oxygenated Krebs–Henseleit buffer (Sigma-Aldrich, UK). As with the porcine pancreases, the microdialysis probes were removed between the HMP and the reperfusion stages. Human pancreas (ii) was donated by a 62 year old man. The organ was offered for transplantation but was refused on the basis of donor age and the presence of atherosclerotic plaques. The pancreas was stored on ice for 25 hours before HMP commenced. In the case of human pancreas (iv), no information was available about the donor. The organ was offered for transplantation and was matched with a recipient, but the recipient was not fit for surgery and by that time the CIT was too long to match the organ to another recipient. The pancreas was stored on ice for 57 hours before HMP commenced. Fig. 1C shows a microdialysis probe positioned in a human pancreas during HMP.
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