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7 protocols using anti cd14 ecd

1

Comprehensive Immunophenotyping of ICU Patients

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Blood samples were collected within 48 hours of ICU admission (Days 1–2 sample) and 4 days thereafter (Days 4–6 sample). Fresh whole blood was stained with different combinations of the following conjugated monoclonal antibodies: anti–CD4-PE, anti–CD3-AA750, anti–CD8-AA700, anti–CD38-PC5.5 or isotype control, anti-CD279 (PD-1)-PC7 or isotype control, anti–HLA-DR-PB or isotype control, anti–CD14-ECD, and CD45-Krome Orange (Beckman Coulter). Acquisition was performed on a 10-multicolor Navios flow cytometer and analyzed with the Kaluza 2.1 software (Beckman Coulter). Gating strategies are depicted in Figure E2.
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2

Flow Cytometry Analysis of Colorectal Cells

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Colorectal tissue was digested with an enzyme cocktail including dispase I and DNase I, as previously described [23 (link)]. The resulting cellular suspension was washed in PBS, counted and stained for flow cytometry analysis at a concentration of 106 cells/mL. Mononuclear cells (MNCs) were fixed in a PBS solution containing 2% paraformaldehyde, 60 mM sucrose at pH 7.4, for 15 min at room temperature. Fixation is necessary for MAb 45523 to bind to cell surface CCR5 on primary CD4+ T-cells. The fixed cells were washed twice with PBS containing 20 mM glycine (buffer A) and incubated for 15 min at room temperature in buffer A supplemented with 1% BSA and 0.05% NaN3 (buffer B). Cells were then stained with mixtures of MAbs in buffer B, anti-CD4-APC-Cy7, anti-CD13-PE, anti-CCR5-2D7-FITC, anti-CXCR4-12G5-FITC, anti-HLA-DR-PE-Cy7 (BD Pharmingen, San Diego, CA), anti-CCR5-45531-FITC, anti-CCR5-45523-FITC, anti-DC-SIGN-PE (R&D Systems), anti-CD14-ECD, anti-CD64-PE, or anti-89-PE (Beckman Coulter), for 1 h at room temperature. After three washes in buffer B, cells were resuspended for analysis using a BD LSR II flow cytometer (BD Biosciences; San Jose, CA, USA). The parameters used to select cell populations for analysis were forward and side-light scatter, with a total of 10,000 events being collected for analysis as described previously [24 (link)].
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3

Isolation and Characterization of Plasmacytoid Dendritic Cells

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Fresh PBMCs were isolated from whole blood by density-gradient centrifugation using the BD Vacutainer CPT Mononuclear Cell Preparation Tubes with Sodium Heparin (BD Biosciences, Franklin Lakes, NJ, USA). The cells were first stained using the Zombie Yellow™ Fixable Viability Kit (BioLegend, San Diego, CA, USA) and then with combinations of the following monoclonal antibodies against human cell-surface antigens for 30 min on ice: anti-CD11c-Alexa700, anti-HLADR-V500, anti-CD19-APC-H7 (all from BD Biosciences), anti-CD14-ECD, anti-CD56-APC, (both from Beckman Coulter, Brea, CA, USA), anti-CD123-FITC, anti-CD3- PerCPCy5.5, anti-CD56-BV421 (all from BioLegend), and anti-CD19-PE (TONBO Biosciences, San Diego, CA, USA). pDCs were identified as CD3-CD19-CD14-CD56-HLADR+CD11c-CD123+(Additional file 2: Figure S1). Data were acquired on a FACS LSR Fortessa (BD Biosciences) and the percentages of each cell population and mean fluorescence intensity were analyzed using FlowJo software (TreeStar Inc., Ashland, OR, USA).
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4

Isolation and Characterization of NK Cells and PMN-MDSCs

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NK cells and PMN-MDSCs were isolated from PBMCs of mobilized and non-mobilized donors using NK isolation kit and CD66b+ microbeads (purity >98%, data not shown) following manufacturer’s instruction (Miltenyi Biotec, Bergisch Gladbach, Germany). Before starting any experiment, we determined the purity of isolated cells by flow cytometry using anti-CD3-APC, anti-CD19-ECD, and CD56-PC7 (Beckman Coulter, Brea, CA) for NK cells. PMN-MDSCs were labeled with anti-CD3-AF700, anti-CD19-AF700, anti-CD11b-FITC, anti-CD33-PC7, anti-HLA-DR-PE, anti-CD14-ECD, anti-CD45-KrOr, and anti-CD66b-APC desiccated in the Duraclone custom design platform (Beckman Coulter, Brea, CA) adding anti-CD56-BV650 (BioLegend, San Diego, CA) and following manufacturer’s instruction. After the staining procedures, cells were acquired at Cytoflex LX and analyzed with Cytexpert software (v2.4, Beckman Coulter, Brea, CA). Freshly isolated NK cells were immediately used for functional studies and gene expression evaluation.
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5

Murine and Human Monocyte/Macrophage Phenotyping

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Mouse monocytes from either 50 μL of whole blood, bone marrow mononuclear cells, or from heart lysates were stained for CD11b (with anti-mouse CD11b, BD Biosciences, #561114), Ly6C (Bio-rad Laboratories, Veenendaal, The Netherlands # MCA2389A647T or BD Biosciences, #561085), and CD206 (Bio-rad Laboratories, #MCA2235A488T), to identify M1 and M2 macrophages, respectively.
Human monocytes were isolated from peripheral blood, through Ficoll gradient separation. Total MNCs (3× 105 cells per sample) were stained with anti-CD14-ECD (Beckman Coulter, Woerden, The Netherlands IM2707U) and anti-CD16-APC (Beckman Coulter, # A66330). Fluorescence was measured with LSRII flow cytometer (BD Biosciences) and analyzed by FACS Diva (BD Biosciences) and the FlowJo software (FlowJo LLC V9.4).
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6

Multi-color Flow Cytometry for Immune Profiling

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Blood and BAL fluid immuno-staining were performed as follows: 100 μL of whole blood or BAL fluid were incubated for 10 min at room temperature in the dark with the following conjugated-monoclonal antibodies: anti-CD3-AA750, anti-CD8-AA700, anti-CD279 (PD-1)-PC7 or isotype control, anti-HLA-DR-PB or isotype control, anti-CD14-ECD and CD45-Krome Orange (Beckman Coulter). For blood samples, red-blood cells were then lysed using VersaLyse Solution (Beckman Coulter). Washed blood and BAL fluid-stained samples were immediately acquired on a 10-multicolor Navios flow cytometer and analyzed with the Kaluza 2.1 software (both from Beckman Coulter). The gating strategy is depicted in Additional file 1: Figure S1 in BAL fluid (Panel A) and blood (Panel B). HLA-DR and PD-1 quantification were expressed in percentage of positive cells or mean fluorescence of intensity (MFI).
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7

Isolation and Staining of White Blood Cells

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White blood cells were isolated from 8 to 10 ml whole blood using CPT (BD) tubes containing Sodium Citrate as an anti-coagulant. Cells were counted and one million cells were stained directly for flow-cytometry analysis or all cells were frozen in RPMI medium containing 20% FCS and 10% DMSO. Frozen cells were thawed in batches for flow-cytometry analysis. Antibodies were purchased from Biolegend, except for anti-CXCR5-biotin (BD Pharmingen) and anti-CD14-ECD (Beckman Coulter). CXCR5-biotin was labeled with Streptavidin-APC-Cy7 (Biolegend). Cells were stained on ice for 30–60 min and washed with FACS buffer (PBS, 2% FCS, 5 mM EDTA, 0.1% sodium azide). Fixable blue live-dead marker (Invitrogen) was added freshly to the antibody mix and was incubated together with the surface marker antibodies. Cells were washed and fixed with 1% formalin for analysis.
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