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49 protocols using urease

1

Metabolite Derivatization and Analysis

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N-methyl-N-(trimethylsilyl)-trifluoroacetamide with 1% trimethylchlorosilane (MSTFA + 1% TMCS) was purchased from Thermo Scientific (Pittsburgh, PA, USA). O-methylhydroxylammonium chloride (methoxylamine hydrochloride), pyridine, 2,2-dimethyl succinic acid, myristic acid d27, pesticide-analytical-grade chloroform and hexane, and high-performance liquid chromatography (HPLC)-analytical-grade methanol were purchased from Wako Pure Chemical (Tokyo, Japan). Urease was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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2

Metabolomic Analysis of Traditional Chinese Herbs

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Analytical grade methoxyamine hydrochloride, methanol, ethanol, chloroform, and pyridine were obtained from China National Pharmaceutical Group Corporation in Shanghai of China. N,O-Bis(trimethylsilyl)trifluoroacetamide (BSTFA:TMCS, 99 : 1), heptadecanoic acid and urease were purchased from Sigma-Aldrich. Liquor (56 %, v/v, 00215) was obtained from Beijing Red Star, China. Double-distilled water was produced by a Milli-Q Ultra-pure water system (Millipore Corporation, United States). Dry S. baicalensis and B. chinense were purchased from Inner Mongolia and An’hui was identified as S. baicalensis Georgi and B. chinense DC by Dr. Lihong Wu of Shanghai University of Traditional Chinese Medicine. Baicalin and Saikosaponin were purchased from Ciyuan Biotechnology (Shanxi, China).
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3

Mass Photometric Protein Analysis

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All mass photometry data were taken using a Refeyn OneMP mass photometer (Refeyn Ltd). Movies were acquired for 6000 frames (60 s) using AcquireMP software (version 2.4.0) and analyzed using DiscoverMP software (version 2.4.0, Refeyn Ltd), all with default settings. Proteins were measured by adding 2 µL of stock solution (100 nM) to an 8 µL droplet of filtered phosphate buffered saline (Gibco 14190144). Contrast measurements were converted to molecular weights using a standard curve generated with bovine serum albumin (Thermo 23210) and Urease (Sigma U7752). The data were fitted to a Gaussian in MATLAB (Mathworks, Natick, MA) to determine the measured molecular weight.
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4

Jackbean Urease Inhibition Assay

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To test the efficiency of the inhibitors, in vitro activity assays were performed using Jackbean (Canavalia ensiformis) urease (EC 3.5.1.5, Sigma Aldrich, Taufkirchen, Germany) dissolved in 0.1 M K-phosphate buffer, pH 7.3. To quantify urease activity, liberation of ammonium from urea was determined spectrophotometrically at λ620 nm, using the Berthelot method in a two-step reaction with hypochlorite and salicylate [22 (link)]. The reaction mixture contained 50 mM urea; 0.1 M K-phosphate buffer, pH 7.3; and 30 U of Jackbean urease in a total volume of 1.0 mL. After incubation for 30 min at 37 °C, 0.5 mL of sodium hypochlorite (0.5% (v/v) free chlorine) in 0.5 M NaOH and 0.1 M salicylic acid in 1.0 M NaOH were added, and color development was measured after 15 min of incubation at room temperature. The urease inhibitors were used at concentrations of 1, 5, or 10 mM.
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5

Enzymatic Pretreatment for LAM Detection

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Proteinase-K, non-specific esterase, phospholipase, phosphatase, urease, or α-mannosidase, (each at 0.1 IU, Sigma-Aldrich, Saint Louis, MO) was added to 150 μl of LAM-spiked urine, and lactase and caseinase (both at 0.1 IU, Sigma-Aldrich) were added to 150 μl of LAM-spiked milk at the concentrations indicated in the figures and figure legends, hand mixed and further incubated for 15 minutes at room temperature. Enzymatically treated LAM-spiked urine or milk was then directly used to perform LAM-tests following manufacturer’s instructions.
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6

Protease Inhibitor Cocktail Preparation

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Protease inhibitor cocktail tablet was purchased from Roche (Mannheim, Germany). Sodium azide, urease, methoxyamine, pyridine, N,O-Bis(trimethylsilyl)trifluoroacetamide with 1% trimethylchlorosilane (BSTFA + 1% TMCS), and methanol were purchased from Sigma-Aldrich (St. Louis, MO). methoxyamine was prepared in pyridine at a concentration of 15 mg/ml.
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7

Synthesis and Characterization of Lipid-Based Nanoparticles

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1-Bromooctane, 1-bromodecane, 1-bromododecane, 1,2-epoxydecane, imidazole, sodium 8-hydroxypyrene-1,3,6-trisulfonate, and dichlorobis(2,2′-bipyridine)ruthenium(II) dihydrate were obtained from Bidepharm. Inv (≥200 U/mg) from baker’s yeast (Saccharomyces cerevisiae) was purchased from MREDA. DEAE-dextran and lipase were obtained from Macklin. GOx (Aspergillus niger, 100 to 250 U/mg, 150 kDa) was obtained from Shanghai Yuanye Bio-Technology Co., Ltd. Urease, and FITC and FITC-dextran were from Sigma-Aldrich. All lipids, including DPPC, DMPC, POPC, and cholesterol were purchased from Aladdin. Polycarbonate membrane (200 nm) and mini-extruder kits were purchased from Avanti Polar Lipids. The other chemicals were commercially available and used without further purification.
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8

Characterizing Immobilized Urease Activity

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The activity of immobilized urease was characterized by a colorimetric assay using a fluorescent pH sensitive dye hydroxypyrene-3,6,8-trisulfonic (Sigma-Aldrich, Saint Louis, MI). A solution of 0.1 M phosphate buffer was adjusted to pH 6.2, the start of the linear region (pH 6.2–8). This buffered solution was used to create a solution of 20 mM urea (Sigma-Aldrich, Saint Louis, MI) and 2 mM 1-hydroxypyrene-3,6,8-trisulfonic (HTPS). A 500 μm thick piece of borofloat glass was immobilized with 0, 1, 3, 5, and 7 layers of urease using the procedure described above. These glass pieces were placed into a 96 well plate. To the well plate 110 μl of the solution containing urea and HTPS was added. The solution was monitored at 10 second intervals for 20 minutes using a Tecan F200 PRO plate reader. The excitation and emission filters on the plate reader were set to wavelengths of 460 nm and 510 nm respectively. To correct for fluorescent quenching the signal obtained from the well with glass pieces containing 0 layers of urease was collected.
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9

Metabolomic Analysis of Gynura segetum

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Gynura segetum (purchased from Bozhou, Anhui, China) was identified as the root of Gynura segetum (Lour.) Merr. by Professor Yajun Cui (School of Pharmacy, Shanghai University of Traditional Chinese Medicine, Shanghai, China.). The plant was stored in the laboratory of the Shanghai University of Traditional Chinese Medicine. Gynura segetum roots were chopped and suspended in distilled water for 2 h. The mixture was then boiled for 1.5 h and filtered. The entire extraction procedure was repeated one time, and the extracts were merged and equilibrated to 1.5 g/mL.
Urease (Lot: SLBB0100V) was purchased from Sigma-Aldrich; methanol (AR) was purchased from Sinopharm Chemical Reagent Co., Ltd; nonadecanoic acid (Lot: E0810030) was purchased from ANPEL Instrument Co. Ltd; 2-chloro-phenylalanine was purchased from Aladdin; methoxyamine hydrochloride (Lot: BCBP2843V) was purchased from Sigma-Aldrich; pyridine (AR, 10018118) was purchased from Sinopharm Chemical Reagent Co., Ltd; BSTFA with 1% TMCS (Lot: 62894) was purchased from REGIS Technologies, Inc. The instruments were: Gas chromatography-mass spectrometry (GC-MS) (Agilent 7890A, 7000B QQQ-MS detector); 1730R centrifuge (Gene Company Limited); Tissue Lyser II homogenizer (Qiagen).
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10

Glutathione-Mediated Synthesis of Luminescent Nanomaterials

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All reagents were of analytical grade and used as obtained. Citric acid monohydrate (CA), reduced glutathione (GSH) and polyethylene polyamine (PEPA) were purchased from Aladdin chemical industry Co., Ltd. (Shanghai, China). Urease was purchased from Sigma-Aldrich (Shanghai, China). Other common chemical reagents, like Na2HPO4 and NaH2PO4 for phosphate buffer (PB) were purchased from Sinopharm Chemical Reagent Co. Ltd (Shanghai, China).
UV-vis absorption spectra were measured on a UV-2250 spectrophotometer (Shimadzu Corporation, Japan). The Cary Eclipse Fluorescence Spectrophotometer (Agilent Technologies, USA) was used to collect the fluorescence spectra with both excitation and emission slit widths of 5 nm. All UV-vis absorption and fluorescence measurements were performed at room temperature under ambient conditions. Fourier Transform Infrared Spectroscopy (FTIR) was collected using a NICOLET iS50 Infrared Spectroscopy (Thermo Fisher Scientific, USA). Transmission electron microscopy (TEM) images were obtained on FEI Talos F200S. Zeta-potentials and dynamic light scattering (DLS) were measured on Litesizer 500 Nanometer laser particle size analyzer (Anton Paar GmbH, Austria).
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