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6 protocols using on targetplus smartpool human sirnas

1

Nrf2 and AhR Silencing Assay

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The ON-TARGETplus SMARTpool human siRNAs against Nrf2 (L-004018-00-0020), AhR (L-004990-00-0020), and ON-TARGETplus nontargeting siRNA (D-001810-10-05) were provided by Thermo Fisher Scientific, Inc. (Waltham, MA, USA). Cells were transfected with the indicated siRNAs at 50 nM for 24 h using the DharmaFECT transfection agent (Dharmacon Research, Lafayette, CO, USA), according to the manufacturer's protocols.
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2

Targeting HIF-1α and HIF-2α in Cells

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ON-TARGETplus SMARTpool human siRNAs against HIF-1α (L-004018-00-0020), HIF-2α (L-004814-00-0020), and ON-TARGETplus non-targeting siRNA (D-001810-10-05) were synthesized by Thermo Fisher Scientific, Inc. (Waltham, MA, USA). Cells were then transfected with the indicated siRNAs at 50 nM for 48 h using DharmaFECT transfection agent (Dharmacon Research, CO, USA) according to the manufacturer’s instructions.
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3

Signaling Pathway Modulation in Thyroid Cells

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U0126, H-89, and LY2228820 were purchased from Selleckchem; GF109203X (GFX) and phorbol 12, 13-dibutyrate from Enzo Life Sciences. Pertussis toxin (PTX) was obtained from Invitrogen; forskolin (FSK) from Sigma-Aldrich. Bovine TSH was from Sigma-Aldrich. M22 thyroid-stimulating antibodies (TSAbs) were from KRONUS (ID 83669; Star). Thyrostimulin was kindly provided by ZymoGenetics, Inc. Tissue-nonspecific anti-ALPL antibody was from Abcam, Inc (diluted 1:2000). The antibody to β-actin was from Sigma-Aldrich. RDye 680 or 800 secondary antibodies were from Li-Cor. GNAS, GNAQ, GNA11, GNAO, GNAI1–3, MAPK1, MAPK3, and MAPK14 ON-TARGET plus SMART pool human siRNAs or ON-TARGET plus nontargeting pool siRNA (scrambled) were from Thermo Fisher Scientific, Inc.
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4

Silencing HIF-1α and HIF-2α in Cells

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The ON-TARGETplus SMARTpool human siRNAs against HIF-1α (L-004018-00-0020), HIF-2α (L-004814-00-0020), and ON-TARGETplus non-targeting siRNA (D-001810-10-05) were synthesized by Thermo Fisher Scientific, Inc. (Waltham, MA, USA). The expression plasmid for HIF-1α was purchased from OriGene (Rockville, MD, USA). The cells were then transfected with the indicated siRNAs at 50 nM, or along with the HIF-1α-expression plasmid for 48 h using the DharmaFECT transfection agent (Dharmacon Research, CO, USA), according to the manufacturer’s instructions.
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5

Transient and Stable Knockdown of Lipid Kinases

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For transient knockdown experiments, cells were seeded in 6-well plates and transfected with 100 nM ON-TARGETplus Human SMARTpool siRNAs (Thermo Scientific) targeting PIKFYVE (Cat.# L-005058-00-0005), PIP5K1C (Cat.# L-004782-00-0005), PIK3CA (Cat.# L-003018-00-0005), or non-targeting control pool (Cat.# D-001810-10-50) using Lipofectamine® RNAiMAX (Invitrogen) according to the manufacturer’s instructions. For stable doxycycline-inducible shPikfyve Myc-CaP cells, a SMARTvector lentiviral shRNA construct encoding a Pikfyve targeting sequence (TGGTGTCTGCGCCTAAATG) was used to infect Myc-CaP cells, and positively-infected cells were selected by puromycin.
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6

Transient and Stable Knockdown of Lipid Kinases

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For transient knockdown experiments, cells were seeded in 6-well plates and transfected with 100 nM ON-TARGETplus Human SMARTpool siRNAs (Thermo Scientific) targeting PIKFYVE (Cat.# L-005058-00-0005), PIP5K1C (Cat.# L-004782-00-0005), PIK3CA (Cat.# L-003018-00-0005), or non-targeting control pool (Cat.# D-001810-10-50) using Lipofectamine® RNAiMAX (Invitrogen) according to the manufacturer’s instructions. For stable doxycycline-inducible shPikfyve Myc-CaP cells, a SMARTvector lentiviral shRNA construct encoding a Pikfyve targeting sequence (TGGTGTCTGCGCCTAAATG) was used to infect Myc-CaP cells, and positively-infected cells were selected by puromycin.
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