precleared with streptavidin-agarose beads and then incubated with biotinylated
double-stranded oligonucleotide containing potential IRF binding site within the
ATAC-seq peak at the Cxcl10 Cluster
(5′-CATAGAAAATGTTTTCAAAACCCGCATTCCGCTTATGCTGTCTGGTATCTGAAATAGATCTGTCAGGGGGTCACATTTTATAAGCACCACTTCGTGTTTG-3′)
or Il6 TSS (trimerized 5′-
TGCTGAGTCACTTTTAAAGAAAAAAAGAAGAGT-3′). Proteins bound to the
biotin-labeled DNA were collected by streptavidin-agarose beads, separated by 8%
SDS-PAGE, and analyzed by immunoblotting using anti-mouse IRF5 (Cell signaling),
anti-human IRF5 (Santa Cruz SC-390364) or an anti-T-bet (Santa Cruz; sc-21749)
antibodies.