The largest database of trusted experimental protocols

10 protocols using 5m naoh

1

Methacrylation of Hyaluronic Acid

Check if the same lab product or an alternative is used in the 5 most similar protocols
Methacrylation of HA was performed by adding methacrylic anhydride 94% (Sigma Aldrich) to 1% w/v of HA (75 kDa, Lifecore, Chaska, MN, USA) in distilled H2O (dH2O) solution. The amount of methacrylic anhydride added and reaction time were varied to get varying degrees of methacrylation [52 (link)]. An excess of methacrylic anhydride, 6-fold and 20-fold relative to primary HA hydroxyl groups, was added and the reactions were carried out for 10 h and 24 h, respectively. The reaction was carried out in the dark at 5 °C. The pH of the 1% w/v HA solution was adjusted to 8.0 using 5M NaOH (Merck, Darmstadt, Germany) at the beginning of the reaction and then maintained at pH 8 to 9, using 5M NaOH for the entire duration of the reaction. Subsequently, the solution was dialyzed by using a cellulose dialysis tubing with the molecular weight cut-off of 11035 (Sigma Aldrich, Singapore) for 48 h in dH2O and freeze-dried using a lyophilizer (Labconco, Kansas City, MO, USA) for 72 h. The lyophilized MeHA was stored at −20 °C before use.
+ Open protocol
+ Expand
2

Synthesis and Characterization of HAMA and GelMA

Check if the same lab product or an alternative is used in the 5 most similar protocols
HAMA was synthesized as described previously.20 (link) Briefly, methacrylic anhydride (Sigma-Aldrich, St. Louis, MO) was added to a solution of 1 wt% hyaluronic acid (53 kDA, Lifecore Biomedical, Chaska, MN) in distilled water. The pH was adjusted to 8 using 5M NaOH (Sigma-Aldrich, St. Louis, MO) and kept on ice during the reaction for 24 hours. The HAMA solution was dialyzed against deionized water for 72 hours after which lyophilization was performed, resulting in a solid white foam-like material that was stored at −80 °C prior to experimental use. The methacrylation degree of ~20% was determined by 1H NMR
The synthesis of GelMA has also been reported before.14b (link),21 (link) Powdered type A cell culture tested gelatin from porcine skin (Sigma-Aldrich, St. Louis, MO) was dissolved in phosphate buffered saline and heated at 60 °C under continuous stirring for 20 minutes to obtain a 10 wt% gelatin solution. After dropwise addition of 8% (v/v) methacrylic anhydride under constant stirring for 3 hours at 50 °C, GelMA solution was diluted and dialyzed against deionized water at 40 °C for one week. This yielded a methacrylation degree of ~80% as determined by 1H NMR Finally, the solution was lyophilized for one week, yielding a white porous foam-like substance, which was stored at −80 °C before experimental use.
+ Open protocol
+ Expand
3

Titanium Disc Surface Activation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Commercially Pure Titanium Grade II discs (McMaster-Carr, Robbinsville, NJ) were punched, ground and polished, activated by etching (5M-NaOH (Sigma-Aldrich St. Louis, MO), 60°C, overnight), and cleaned with solvents (deionized water (DI, Mili-Q Plus), isopropopanol, and acetone (eTi)).
+ Open protocol
+ Expand
4

Collagen-Based Cell Culture Gel Formation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Type 1 rat tail collagen (Corning Inc., Corning, NY, USA) was diluted with 0.6% acetic acid (Sigma-Aldrich, St. Louis, MO, USA) to a final collagen concentration of 2 mg mL−1. This solution was neutralized with 5 m NaOH (Sigma-Aldrich, St. Louis, MO, USA), and 10× α-minimum essential media (Sigma-Aldrich, St. Louis, MO, USA) was added to a final concentration of 1×. HEK cells were added, and the solution formed a gel over the course of 30 min of incubation at room temperature.
+ Open protocol
+ Expand
5

Co-culture of P. citronellolis and C. necator

Check if the same lab product or an alternative is used in the 5 most similar protocols
P. citronellolis NRRL B-2504 and C. necator DSM 428 were co-cultured in a bioreactor with a working volume of 10 L (BioStat B-Plus, Sartorius, Germany), with a starting volume of 9.5 L. The cultivation runs were initiated by inoculating 400 mL of each culture grown in LB medium for 24 h, at 30 °C and 200 rpm, in an orbital shaker.
The temperature and the pH were controlled at 30.0 ± 0.1 °C and 7.00 ± 0.02, respectively. The pH was controlled by the automatic addition of 5 M NaOH (98%, Sigma-Aldrich, USA) or 2 M HCl (37%, Sigma-Aldrich, USA). A constant air flow rate (4 SLPM, standard liters per minute) was kept during the cultivation runs and the dissolved oxygen concentration (DO) was controlled at 30% of the air saturation by the automatic adjustment of the stirring speed (300–800 rpm). Foam formation was suppressed by the automatic addition of Antifoam A (Sigma-Aldrich, USA). The bioreactor was operated under a batch mode during 48 h. Samples (24 mL) were collected from the bioreactor for biomass, PHA, and nutrient quantification.
A bioreactor cultivation was also performed, under similar conditions, with a monoculture of C. necator for comparison.
+ Open protocol
+ Expand
6

3D Fibroblast Culture in Collagen Gel

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fibroblasts were plated at a density of 1.6 × 106 cells/ml with 10× concentrated MEM (Invitrogen) and collagen type 1 solution (2 mg/ml, First Link) in a final volume of 1 ml. The collagen stock solution contains 0.6% acetic acid and was neutralized with 5 M NaOH (Sigma-Aldrich) prior to addition of cells. The collagen/fibroblast mixture (60 µl per well of a 96-well plate) was left to set at 37°C for 30 minutes in 5% CO2 in air. RPMI 1640 supplemented with 10% FBS, and 1% penicillin/streptomycin was added to the gels before they were released from the well edge. Gels were incubated at 37°C in a humidified atmosphere of 5% CO2 in air. Images were captured on day 1 with a standard digital camera. Gel areas were measured and analyzed using Image J software (NIH).
+ Open protocol
+ Expand
7

Production of LBA in Bioreactor

Check if the same lab product or an alternative is used in the 5 most similar protocols
Biomass of P. taetrolens LMG 2336 (obtained as explained in Section 2.1.1) was inoculated (at 10% (v/v)) in a 500 mL Erlenmeyer flask containing 100 mL of sterile deproteinised sweet whey, and it was incubated for 12 h at 30 °C, with an agitation of 250 rpm. After this time, the culture was again centrifuged (10,000 rpm, 10 min), and the biomass obtained was employed to inoculate the 2 L bioreactor (BioFlo 110; New Brunswick Scientific Co., Edison, NJ, USA), employing again 10% (v/v) of inoculum. The working volume of the bioreactor was 1 L with mechanical agitation. The operating parameters used were 30 °C, 350 rpm, and 1 Lpm aeration, following the conditions optimised by Alonso et al. (2012) [26 (link)] to maximize the production of LBA. Foaming was avoided by automatic addition of diluted (1:10) Y-30 emulsion (Sigma-Aldrich). The bioreactor was equipped with a pH-meter (Mettler Toledo, Greifensee, Switzerland). To maximize the LBA production, pH was left uncontrolled during the exponential growth phase and then with the automatic addition of 5M NaOH (Sigma-Aldrich) and was maintained at a value of 6.5 [26 (link)]. The bioreactor fermentation process lasted a total of 72 h.
+ Open protocol
+ Expand
8

3D Printing of Porous Poly(caprolactone) Scaffolds

Check if the same lab product or an alternative is used in the 5 most similar protocols
PCL (MW 45 kDa, melting temperature = 60°C, Sigma-Aldrich) pellets were melted at 110°C in a metallic cartridge of 3D-Bioplotter (EnvisionTEC, Gladbeck, Germany) and extruded through a needle with an inner diameter of 400 µm. Square-shaped scaffolds measuring 30 mm×30 mm, composed of four layers with an orientation of 0°-45°-90°-135° and strand spacing of 1mm were 3D printed and then punched to fit into 48-well plates. The scaffolds were cleansed with 70% ethanol for 15 min, etched with 5M NaOH (Sigma-Aldrich) for 6 h and then washed with deionized H2O until the pH reached 7.4. After etching, the scaffolds were immersed in CNF solution (0.33% solid content) for 6 h and then freeze-dried for 24 h. To confirm that NaOH etching has no negative effect on the bulk properties of the 3D printed scaffolds, tensile testing was performed on printed unmodified and NaOH-etched, four-layered dumbbell-shaped samples at room temperature, using a material testing system (MTS 858 MiniBionix II, USA) at a stretching speed of 0.5 mm/s.
+ Open protocol
+ Expand
9

Bioreactor Cultivation of Pseudomonas and Burkholderia

Check if the same lab product or an alternative is used in the 5 most similar protocols
The experiments were carried out by cultivating Pseudomonas citronellolis NRRL B-2504, Burkholderia thailandensis E264, and Pseudomonas sp. in 2 L bioreactor runs (BioStat B-Plus, Sartorius, Germany) using Medium E* supplemented with the hydrolysate (at an initial sugar concentration of 31.4 g/L). The bioreactors were inoculated with a 10% (v/v) inoculum (200 mL), prepared as described above, and operated in the batch mode. The pH and temperature were controlled at 7.0 ± 0.1 and 30 ± 0.1 °C, respectively. The pH was controlled by the automatic addition of 2 M HCl and 5 M NaOH (Merck, Darmstadt, Germany). The airflow was kept constant (2 SLPM, standard litres per minute) throughout the runs. The concentration of the dissolved oxygen (DO) decreased from full saturation at the beginning of the runs to 30% of the air saturation, the value at which it was controlled by the automatic adjustment of the stirrer speed between 200 and 2000 rpm. Antifoam A (Sigma-Aldrich) was added automatically to avoid foam formation. Samples (12 mL) were collected from the bioreactor and centrifuged (at 9000× g for 15 min) for cellular separation. The cell-free supernatant was preserved at −20 °C for the sugar, acid, and ammonium quantifications, while the cellular pellets were used for the quantification of the CDW and determination of the PHA content and composition.
+ Open protocol
+ Expand
10

Preparation and Characterization of Bacterial Cell-Free Supernatants

Check if the same lab product or an alternative is used in the 5 most similar protocols
For each Lactobacillus/Limosilactobacillus/Lactiplantibacillus strain, 500 μL of a culture grown overnight (108 CFU/mL) was used to inoculate 10 mL of MRS broth, and strains were allowed to grow for different times (7 h, 13 h, and 24 h). E. faecalis BC101, E. faecium BC105, S. aureus SO105, and S. epidermidis SO106, preventively grown on nutrient agar plates, were inoculated into MRS broth and subcultured as described above for lactobacilli.
At the end of each incubation, the supernatant was harvested by centrifugation (10,000 × g for 10 min) (Centrisart G-16C; Sartorius, Göttingen, Germany) and filtered through a 0.22-μm-pore-size filter (polyethersulfone [PES] 0.22-μm syringe filters; VWR International, Milan, Italy) to obtain CFSs at 7 h, 13 h, and 24 h. The final pH (pH50; Vio Lab Geass, Turin, Italy) was adjusted to 6.5 with 5 M NaOH (Merck), and samples were stored at −20°C until their use.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!