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19 protocols using p1010

1

Chitosan and HTCC Solutions: Preparation and Characterization

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HTCC (YJ201854; Cool Chemistry) was dissolved in DDW and PBS (P1010; Beijing Solarbio Science & Technology Co. Ltd.) and the concentration of the stock solution was 10,000 µg/ml. Chitosan (molecular weight, 150 kDa; substitution degree, 85%; Laizhou Haili Biological Products Co. Ltd.) was dissolved in 1% (v/v) acetic acid (Jiangsu Qiangsheng Chemical Co. Ltd.) and the concentration of the initial stock solution was 10,000 µg/ml. DDW and PBS were used to dilute the chitosan and HTCC solution. The double dilution method was used to prepare a series of chitosan and HTCC solutions with different concentrations, namely 2,500, 1,250, 625, 313, 156, 78, 39 and 20 µg/ml. All of these solutions were divided into two groups according to the solvents; the DDW and PBS groups. The positive control group was 2% (v/v) sodium hypochlorite (NaClO; Tianjin Beichen Fangzheng Chemical).
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2

Retinal Whole-Mount Immunohistochemistry

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Mice were killed using CO2 at a 30% chamber replacement rate. After the mice had been completely euthanized, their eyes were removed. The cornea was removed after the eyes were soaked in 4% PFA for 20 min. Following 1 h in PFA, the lens was removed; the eye cups were cut into four petals, similar to a four-leaf clover, then turned over and the retina was gently peeled out. The whole-mount retinas were washed three times (10 min each time) with 1 × PBS (Solarbio, P1010), permeabilized for 2 h at room temperature with 3% Triton X-100 in 1 × PBS, and incubated overnight at 4 °C with blocking solution (5% bovine serum albumin in 0.3% Triton). The retinas were then treated with primary antibodies overnight at 4 °C. After that, the sample was incubated with secondary antibodies for 2 h at 37 °C after being rinsed three times (10 min/time) with 1 × PBS at room temperature. To stain the nuclei, retinas were treated with DAPI for 10 min before being rinsed as before. The anti-fluorescence quenching agent was then used as a sealant. Additional file 1: Table S1 lists the sources of primary and secondary antibodies as well as the working dilution ratio for each.
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3

Single-cell transcriptome analysis of hAMSCs and SCLCs

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The cultured hAMSCs and SCLCs were first digested in a 0.05% trypsin (Solarbio, T1300) solution and then re-suspended in pre-cooled PBS (Solarbio, P1010) containing 0.04% BSA (Solarbio, A8010). One sample for each group. We prepared a single-cell library, following the manufacturer’s instructions (Chromium Single Cell 3′ v2 Reagent Kit; 10X Genomics, Pleasanton, CA, United States). Briefly, the cell suspension (2,000 cells/μl) was loaded on to Chromium microfluidic chips. The mRNA from the barcoded cells was subsequently reverse-transcribed, and sequencing libraries were constructed using reagents from the kit according to the manufacturer’s instructions. Sequencing (NovaSeq) was performed by Novogene. RNA-seq data used in this study were deposited into the GEO database (GSE161066).
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4

Immunohistochemical Analysis of Protein Expression

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Tissues were cut into sections 5 μm thick, dewaxed with xylene, and the slides were washed in decreasing concentrations of ethanol (100%, 100%, 95%, and 75%) for 3 minutes each time. Immerse slides were washed in 4% paraformaldehyde in PBS for 5 minutes. They were washed 3 times for 5 min each in PBS (p1010, Solarbio, CHN). We used 0.01 mol/L citric acid antigen repair solution (22F00120, Dingguo, CHN) and thermal repair at 98 °C for 15 min to expose the antigen epitopes. It was treated for 12 min at room temperature with 3% H2O2 in PBS to block endogenous peroxidase activity. It was washed 3 times for 5 min each in PBS. For the primary antibody labeling, the slides were incubated with diluted rabbit polyclonal antibodies to PLAC8, Ki-67, β-Catenin, and PCNA at 4 °C overnight. The next day at room temperature for 1 hour, it was washed 3 times for 5 min each in PBS. Tissue sections were soaked with EnVision™ + System/HRP (DAB) (GK500710, Gene Tech, CHN). The tissues were then counterstained with hematoxylin and dehydrated with ethanol and xylene to prep for mounting. Brown staining in the nucleus was considered an indicator of protein expression and counted using a microscope (Olympus, JPN) at a magnification of ×200. For this purpose, five fields per slide were randomly selected by the viewer for evaluation.
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5

Retinal Tissue Preparation and Staining

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Mice were killed using CO2 at a 30% chamber replacement rate. After the mice had been completely euthanized, their eyes were removed. The cornea was removed after the eyes were soaked in 4% paraformaldehyde (PFA) for 20 min. After 1.5 h in PFA, the eye cups were put in 30% sucrose overnight at 4 °C. After removing the lens, the eye cups were air dried and imbedded with ideal cutting temperature compound, 4 °C freezing for 30 min, and stored at 20 °C until sectioned at 12 μm thickness.
The retinal slices were dried at room temperature for about 30 min before being washed three times (10 min each) with 1 × PBS (Solarbio, P1010), permeabilized for 10 min at room temperature with 0.3% Triton X-100 in 1 × PBS, and incubated with blocking solution (5% bovine serum albumin in 0.3% Triton) for 1 h at 37 °C. Primary antibodies were treated with the retinal slices overnight at 4 °C. The slices were then rinsed three times (10 min each) with 1 × PBS at room temperature before being incubated with secondary antibodies for 2 h at 37 °C. Sections were stained with DAPI for 7 min and cleaned as previously described. Finally, for sealing, an anti-fluorescence quenching agent was utilized. The working dilution ratio and sources of primary and secondary antibodies are listed in Additional file 1: Table S1.
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6

Antiviral Efficacy of Coptisine and Chrysin

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MDCK cells were seeded in 12-well plates at a density of 2.0 × 105 cells/well and incubated at 37 °C with 5% CO2 overnight. The next day, different concentrations of coptisine and A/PR/8/34 (H1N1) (MOI = 0.5) were mixed at 4 °C for 30 min before being added to the MDCK cells at 37 °C for 2 h. After that, the supernatant was removed, and the cells were washed twice with PBS (Solarbio, P1010, Beijing, China). Different concentrations of chrysin were added to the cells, which were then cultured for 24 h at 37 °C. The cytopathic effect was observed under a microscope.
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7

Apoptosis Assay of Transfected Breast Cancer Cells

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We collected 1 × 106 transfected MCF-7 and MDA-MB-231 cells, washed with phosphate buffered saline (P1010; Solarbio Lifesciences, China) and suspended using 1 mL of binding buffer (1×), followed by centrifugation at 300 × g in a 5810 Centrifuge. The supernatant was abandoned subsequently. All cells were then resuspended with 1 mL of binding buffer (1×), and the density was adjusted to 1 × 106 cells/mL. A volume of 100 μL of cells suspension was added into each tube, and 5 μL of Annexin V-FITC was also added. A gentle blend was performed at room temperature (RT) for 5 min avoiding light, after which 5 μL of propidium iodide (PI) was added into the tube and all cells were additionally incubated at RT for 5 min in the dark. The apoptosis was detected using an Annexin V-FITC/PI apoptosis detection kit (CA1020, Solarbio Lifesciences, China) using a S1000EON flow cytometer (Stratedigm, Inc., San Jose, CA, USA), and all data were analyzed using Kaluza C Analysis Software 1.12 (Beckman Coulter, Indianapolis, IN, USA).
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8

Evans Blue Dye Extravasation for BBB Damage

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The brain tissue Evans blue (EB) dye extravasation method was applied to determine the extent of blood-brain barrier (BBB) damage on the 3rd day after ICH. EB (E8010, Solarbio, Beijing, China) with a final concentration of 2% was administered intraperitoneally (4 ml/kg) in anesthetized mice and allowed to circulate in vivo for 3 h (Manaenko et al., 2011 (link)). After transcardiac perfusion with phosphate buffer saline (PBS, P1010, Solarbio, Beijing, China), the right hemisphere was collected and homogenized in a glass homogenizer with PBS (1,100 μL). The brain tissue homogenates were then sonicated and centrifuged (30 min, 15,000 g, 4°C). The resulting supernatant was collected and mixed with an equal amount of 50% trichloroacetic acid (T104261, Aladdin, Shanghai, China). After incubation overnight at 4°C, the mixture was centrifuged at 15,000 g for 30 min at 4°C. Finally, the absorbance of the supernatant at 610 nm was determined using a microplate reader. The extent of BBB damage in each group (vehicle, ATO, DXM, and ATO-DXM) was evaluated by comparing the experimental group to the OD610 of the sham group.
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9

Immunofluorescence Staining Protocol

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Cell monolayers were fixed with 4% paraformaldehyde for 10 min and then permeabilized using 0.02% Triton X-100 (Solarbio, T8200) in PBS (Solarbio, P1010). After blocking with 2% bovine serum albumin (Solarbio, A8020), cells were incubated with indicated primary antibodies overnight at 4°C and fluorescence-labeled secondary antibodies for 30 min at room temperature. Cell nuclei was stained with DAPI (Beyotime, C1005). Laser-scanning confocal microscopy was performed on a Zeiss LSM880 (Institute of Medicine, Wuhan University, Wuhan, China). All images were taken with the same acquisition condition, brightness/contrast of images adjusted only for presentation purposes. For colocalization analysis, colocalization finder plugin of ImageJ software was utilized.
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10

Liensinine Inhibits Cell Colony Formation

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1000 cells per well were plated onto 6-well plates (each well contained 2 mL medium supplemented with 10% FBS). After adherence for 24 h, the cells were treated with 0 μM, 40 μM, and 80 μM liensinine for 24 h; following which, the medium was replaced with the complete medium. The cells were cultured for 14 days; subsequently, they were fixed with 4% ice-cold paraformaldehyde, stained with 0.1% crystal violet, and washed thrice with PBS (P1010, Solarbio, Beijing, China). Images of cell colonies were captured by a camera (Alpha 7R IV, SONY, Tokyo, Japan), and the cell colony numbers were analyzed using the Image J software.
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