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6 protocols using mouse igg1k

1

Immune Phenotyping of T Cells and Dendritic Cells in Kawasaki Disease

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Given the role of T cells and myeloid dendritic cells (DC) in the pro- and anti-inflammatory pathways in KD, we focused on immune phenotyping these cell populations. Myeloid DC populations were characterized and enumerated by flow cytometry using the following monoclonal antibodies (mAb) : anti-human CD11c-APC, mouse IgG1κ, clone B-ly6, anti-human CD11b-APC-Cyanin 7 (Cy7), mouse IgG1κ, clone ICRF44, anti-human CD14-phycoerythrin (PE) Cy7, mouse IgG2aκ, clone M5E2, anti-human CD86-fluorescein isothiocyanate (FITC), mouse IgG1κ, clone 2331 (FuN-1) (eBioscience).
T cell populations were characterized and enumerated by flow cytometry using the following mAb: CD25 BV421, mouse IgG1 k, clone M-A251 (BD Bioscience), anti-human CD4-percp-Cy5.5, mouse IgG1k, clone RPA-T4, anti-human CD8, Alexa Fluor 700, clone RPA-T8, mouse IgG1k, anti-human CD45RA APC, mouse IgG2b k, clone HI100, anti-human CD127 FITC, mouse IgG1 k, clone eBioRDR5, anti-human HLA-DR APC-H7 clone G46-6, mouse IgG2a k (eBioscience). Data were acquired with FACS ARIA II and analyzed using FACSDiva (BS Biosciences, San Jose, CA).
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2

Immunohistochemical Analysis of Cytochrome C Oxidase

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Methanol (LC-MS grade, > 99.9%) and water (CHROMASOLV LC-MS grade) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Formic acid (99.0+%, Optima LC/MS grade), primary antibody mouse anti-cytochrome c oxidase subunit 4 (COX4) (1:500), and isotype negative control antibody mouse IgG1k (1:1000) were purchased from Thermo Fisher Scientific (Norcross, GA, USA). Primary antibody of rabbit anti-TTR (1:200) was purchased from Agilent (Santa Clara, CA, USA). Biotin-conjugated horse anti-mouse/rabbit secondary antibody, avidin-biotin-alkaline phosphatase complex (ABC-AP), and alkaline phosphatase (AP) substrate were purchased from Vector Labs (Burlin-game, CA, USA). Periodic acid Schiff-hematoxylin staining (PASH kit) was purchased from Poly Scientific R&D Corp (Bay Shore, New York, USA).
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3

Scratch Wound Closure Assay with S Protein

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Cells were seeded into 96-well plates. A scratch was produced in confluent PCs in the centre of each well using a 20-μl tip. Cells were washed twice with PBS to remove detached cells and incubated with EBM2 medium under FBS and growth factors deprivation during the experiment. Cell proliferation was inhibited using hydroxyurea (2 mM). Where required, cells were pre-incubated with the anti-CD147 antibody (20 μg/ml) for 1 h at 37°C. In selected experiments, a mouse IgG1 k (Thermo Fisher, cat# 12-4714-42) was used as an isotype control at the same concentration of the CD147 antibody. For the initial dose–response experiment, increasing concentrations of S protein were employed (62.5, 125, 250, 500, 1000 ng/ml). For all the following experiments, the S proteins (either S or S1 or S2) were added to the system at a final concentration of 5.8 nM. PBS vehicle was used as control. Images were snapped at baseline and after 24 h, using an inverted Leica microscope equipped with a 5× objective. The wound area was measured, and the percentage of wound closure calculated. Per each patient, experiments were performed in four to five replicates.
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4

Flow Cytometry Characterization of Extracellular Vesicles

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EVs were attached to 4 µm aldehyde/sulfate latex beads (Invitrogen) by mixing 30 µg EVs in 10 µL beads for 15 min at room temperature with continuous rotation. The suspension was diluted to 1 mL with PBS and incubated overnight with continuous rotation at 4 °C. The reaction was terminated with 100 mM glycine and maintained for 30 min at room temperature. Next, the solution was centrifuged for 3 min at 4000 rpm in a microcentrifuge and the resulting supernatant discarded. Beads were washed twice with PBS/0.5% BSA with centrifugation at 4000 rpm for 3 min. EV-bound beads were incubated with biotin-labeled anti-CD9 (catalog number: 13-0098, eBioscience, San Diego, CA, USA) for 30 min with continuous rotation at 4 °C and rewashed twice with PBS/0.5% BSA with centrifugation at 4000 rpm for 3 min. Next, beads were incubated with streptavidin conjugated phycoerythrin (SA-PE) (BioLegend) for 30 min with continuous rotation at 4 °C. Beads were washed three times with PBS/0.5% BSA and pelleted at 4000 rpm for 3 min, and the pellet was resuspended in 1 mL PBS/BSA. Antibody-stained EV-coated beads were analyzed on a flow cytometer (FACSCalibur, BD Biosciencs, Franklin Lakes, NJ, USA) and fluorescence compared with specific antibodies and relevant isotype controls (Mouse IgG1K, eBioscience).
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5

Endothelial Cell Receptor Expression

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HUVEC, HMEC-1 or HC-6014 were separated from their co-culture with Caki-1 cells. For separation by flow cytometry Caki-1 cells were marked with the CellTracker CM-Dil dye (Mo Bi Tec, Göttingen, Germany) prior to co-culture (detectable by FACScalibur, BD Biosciences, Heidelberg; FL2-H channel histogram analysis; 1 × 104 cells/scan). Cells were detached, washed in FACS buffer (PBS, 0.5% BSA) and incubated for 60 min at 4°C with monoclonal antibodies (mAbs) directed against the following endothelial adhesion receptors: ICAM-1 (CD54, HA58), VCAM-1 (CD106, 51-10C9), E-selectin (CD62E, 68-5H11), P-selectin (CD62P, AK-4, all: APC labelled, anti-human, mouse IgG1 K, 20 μl, BD Pharmingen, Heidelberg, Germany), CD44 standard (CD44std, SFF-2, mouse IgG1 K, 1:20) and CD44 variants V3 (VFF-327v3, 1:10), V4 (VFF-11, 1:20), V5 (VFF-8) and V7 (VFFF-9, 1:20, all: mouse IgG1, 20 μl, eBioscience, Frankfurt, Germany). All CD44 antibodies were labelled with APC (Lightning-Link Allophycocyanin – XL Conjugation Kit, Innova Biosciences, Cambridge, UK). APC mouse IgG1, K (MOPC-21, 20 μl, BD Pharmingen, Heidelberg, Germany) served as isotype control. Receptor expression of HUVEC was measured by flow cytometry using FACScalibur (BD Biosciences, Heidelberg; FL4-H channel histogram analysis; 1 × 104 cells/scan). Data were expressed as mean relative fluorescence intensity (MFI).
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6

CHIKV Infection Inhibition by Anti-MCP-1 Antibody

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PBMCs were pretreated with different concentrations (1.25, 2.5 and 5 μg/mL) of anti-MCP-1 antibody (clone 5D3-F7; eBioscience) or an isotype control (mouse IgG1 K; eBioscience). The following day (20 hpi) the cells were infected with CHIKV at MOI 1, 5 and 10. 2 hpi the viral inoculum was removed and replaced by fresh medium containing the corresponding antibody. At 24 hpi, cell-free supernatant was collected and viral production was determined by plaque assay and qPCR.
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