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58 protocols using anti cxcr4

1

Immunofluorescent Analysis of Periosteal Cells

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For additional immunofluorescent staining, either CD146+ periosteal pericytes in culture or cryosections (12–16 μm) of human periosteum, adipose, and intramuscular implants were used. All specimens were blocked with 5% serum in PBS for 1 h at 25 °C. Antigen retrieval was by trypsin enzymatic antigen retrieval solution (Cat# ab970; Abcam) for 5 min. Specimens were incubated with the following primary antibodies: anti-CD146 (Abcam, 1:50), anti-CD31 (Cell Signaling Technology, 1:320 or Abcam, 1:100), anti-Gli1 (Abcam, 1:100), anti-PDGFRα (Abcam, 1:200), anti-PDGFRβ (Abcam, 1:100), anti-OCN (Abcam, 1:200), and anti-CXCR4 (Abcam, 1:150). The Dylight 594 goat anti-rabbit IgG (H + L) polyclonal (Vector, 1:200), Goat anti-armenian hamster IgG (H+L) Alexa Fluor 647 (Abcam, 1:200) or Goat anti-mouse IgG (H + L) Alexa Fluor 488 or 647 (Abcam, 1:200) were used as secondary antibodies. Sections were counterstained with DAPI mounting medium (Cat# H-1500, Vector laboratories). All histological sections were examined with a Zeiss 780 confocal microscope (Zeiss, Thornwood, NY, USA) or microscopy of Leica DM6 B (Leica Microsystems Inc).
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2

Protein Extraction and Analysis of CXCR7 and CXCR4

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In our experiment, cells were harvested at the indicated times with RIPA lysis buffer (50 mM Tris–HCl, pH 7.4; 1% TritonX-100; 150 mM NaCl; 1% sodium deoxycholate; 0.1% SDS), including the phosphatase inhibitors (sodium orthovanadate, 2 mM) and protease inhibitor (0.5 µg/mL leupeptin, 0.1 µg/mL aprotinin, 0.6 µg/mL pepstatin A), for 30 min. After centrifugation at 12,000 rpm for 15 min, the protein content of cell lysates was determined using a BCA protein estimation kit (Pierce, USA), and bovine serum albumin was used as the standard. Equal amounts (15 µg) of protein were loaded per lane and electrophoresed in a 12% acrylamide gel, which was run at 120 V for 1 h. Protein transfer was performed using nitrocellulose for 1 h at 100 V. The primary antibodies used were anti-CXCR7 (1∶1000; Santa) and anti-CXCR4 (1∶1000; Abcam). Anti-rabbit or goat HRP and an Amersham ECL kit (GE Healthcare, USA) were used to detect protein. The band densities were quantified by densitometry (Quantity One v4.62).
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3

Investigating Stem Cell Markers and Signaling Pathways

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Western blotting analysis was performed as described previously [22 (link)]. The following primary antibodies were used: anti-Nanog, anti-Sox2, anti-Oct4, anti-β-catenin, anti-phospho β-catenin (Ser33/37/Thr41), anti-Gsk3β, anti-phospho Gsk3β (Ser9), anti-Akt, anti-phospho Akt, anti-β-actin (Cells Signaling Technology, Danvers, MA, USA, 1:1000), anti-CXCR4 (Abcam, USA, 1:2000). β-actin was used as an internal control.
For immunofluorescence staining, miR-410 overexpression or knock-down stable A549 cells and miR-410 overexpression or knock-down stable H1299 cells were seeded onto poly-l-lysine coated glass coverslips in 6-well dishes. After 24 h, the cells were fixed with 4% formaldehyde in PBS, permeabilized in PBS containing 0.5% Triton X-100 and blocked with 1% bovine serum albumin in PBS. Then cells were incubated with anti-Gsk3β (Cells Signaling Technology, Danvers, MA, USA, 1:200) antibody overnight. The next day, cells were washed and incubated with TRITC-conjugated anti-mouse or anti-rabbit antibody (ZhongShanJinQiao Biotechnology, Beijng, China, 1:100) or DAPI (4′, 6-diamidino-2- phenylindole).
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4

CXCR4 and CXCR7 Interaction Evaluation

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Cells were lysed by IP buffer (Beyotime, China), incubated with anti CXCR4 (Abcam) or anti CXCR7 antibody (R&D) overnight at 4℃. Protein A/G magnetic beads (Bimake) were subsequently added and the mixture were incubated at 4℃ for 1 h. The beads were collected by magnetic separation and the non-binding supernatant was discarded. Bound protein was eluted by boiling at 100℃ for 5 min. Samples were subjected to Western blotting to evaluate the interaction of CXCR4 and CXCR7.
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5

Characterization of Neurotoxic Venom Components

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The following primary antibodies were employed: anti-VAMP1 (1:200, generated as described in [23 (link)]), anti-CXCR4 (Abcam, cat. Ab 124824, 1:400, Cambridge, UK), and anti-Neurofilament (Abcam, cat. Ab 4680, 1:800). The α-bungarotoxin (α-BTx) (cat. B35451, 1:200) and Alexa-conjugated secondary antibodies (1:200) were from Life Technologies. Unless otherwise stated, all other reagents were from Sigma. NUCC-390 was synthesized as previously described in [20 (link)].
The M. nigrocinctus venom was a pool of more than 50 specimens collected in the central and Pacific regions of Costa Rica and kept at the Serpentarium of Instituto Clodomiro Picado (University of Costa Rica). Once obtained, the venom was freeze-dried and stored at −20 °C.
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6

Protein Expression Analysis in Cell Lysates

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Total cell lysates were prepared using M-PER Mammalian Protein Extraction Reagent (ThermoFisher Scientific, Cat#78,503). A bicinchoninic acid protein assay (ThermoFisher Scientific) was used to estimate protein concentration. After separation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis using a NuPAGE electrophoresis system, protein extracts were transferred to immobilon polyvinylidene difluoride membranes. The membranes were blocked in 5% milk and then incubated with anti-CXCL12 (Proteintech), anti-CXCR4 (Abcam), anti-TSPAN4 (Biossusa), anti-integrin β1 (Abcam), anti-actin (Abcam), anti-RhoA, and anti-PPAR-γ (Abcam) primary antibodies following the manufacturers’ instructions. Thereafter, the membranes were incubated with secondary antibodies and a WesternBreeze Chemiluminescent Detection Kit (ThermoFisher Scientific) was used to detect signals. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) served as an internal control.
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7

Adipogenic Differentiation of Mouse ASCs

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Anti-TSPAN4 (Biossusa, Cat#bs-9413R); anti-TSPAN7 (Biorbyt, Cat#orb373388); anti-integrin β1 (SantaCruz, Cat#sc374429); anti-CXCL12 (Proteintech, Cat#174021AP); anti-CXCR4 (Abcam, Cat#ab124824); anti-CD34 (Abcam, Cat#ab81289); anti-Perilipin (Progen, Cat#Gp40); anti-RhoA (Abcam, Cat#ab86297); anti-PPARγ (Abcam, Cat# ab209350) antibodies; goat anti-rabbit Alexa Fluor® 488 IgG (Abcam, Cat# ab150077); goat anti-guinea pig Alexa Fluor® 647 IgG (Abcam, Cat# ab150187); goat anti-rabbit Alexa Fluor® 647 IgG (Abcam, Cat#ab150079); goat anti-mouse Alexa Fluor® 488 IgG (Abcam, Cat#ab150113); AMD3100 (Abmole, Cat#M1898); CCG-1423 (Abmole, Cat#M8999); culture medium for mouse ASCs (OriCell, Cat#MUXMD9011); PBS (Gibco, Cat#10,010,023); trypsin–EDTA (Gibco, Cat#25,200,056); siRNA targeting CXCL12 (SANTA CRUZ, Cat#sc-39,368).
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8

Exosome Protein Extraction and Analysis

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Exosome-derived proteins were extracted from exosomes using a Qproteome Mammalian Protein Prep Kit (Qiagen). Proteins from cell lysates were then analyzed using western blotting. Cells were first harvested and then suspended in RIPA lysis buffer (Beyotime, Haimen, China) containing 1 mM PMSF and a protease inhibitor cocktail. Protein content was quantified using a BCA Protein Assay Kit (Pierce, Rockford, IL, United States) and then separated with 10% SDS-PAGE. The proteins were transferred to polyvinylidene difluoride (PVDF) membranes (Millipore Corporation, Bedford, MA, United States), blocked with 5% BSA, and then incubated overnight at 4°C with the following primary antibodies: anti-hnRNPA2B1 (1:1,000; Abcam), anti-CXCL12 (1:1,000; Bioss, Beijing, China), anti-CXCR4 (1:100, Abcam) and anti-GAPDH (Santa Cruz Biotechnology, Santa Cruz, CA, United States). Membranes were then incubated with horseradish peroxidase (HRP)-conjugated secondary antibody (Abcam) for 1 h at room temperature. Enhanced chemiluminescent (ECL) reagent (Pierce, Rockford, IL, United States) was used to visualize the signals.
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9

Western Blot Analysis of Protein Markers

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The total protein lysate of cells was prepared in radioimmunoprecipitation assay buffer containing 1 mM phenylmethylsulfonyl fluoride (Beyotime, Shanghai, China). A bicinchoninic acid protein assay kit (Beyotime) was used to determine the protein concentrations. Equal amounts (20 μg) of proteins were separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto a polyvinylidene difluoride membrane (Millipore, Billerica, MA, USA). Subsequently, the membrane was incubated in 5% nonfat milk in Tris-buffered saline (TBS) for 1 h at room temperature. The following primary antibodies were incubated with the membrane at 4°C overnight: anti-CXCR4 (cat:#ab181020, 1 : 1,000) from Abcam (Cambridge, MA, USA), anti-AFP (cat:#4448, 1 : 1,000), anti-FOXM1 (cat:#20459, 1 : 1,000), phosphor-FOXM1 (cat:#14170, 1 : 1,000), and anti-p65 (cat:#3033, 1 : 1,000) from Cell Signaling Technology (Danvers, MA, USA), as well as anti-β-actin (cat:#66009-1-Ig, 1 : 5,000) from Proteintech. After washing with 0.5% Tween-20 in TBS, the membrane was incubated with horseradish peroxidase-conjugated secondary antibody (Absin, Shanghai, China) for 1 h at room temperature. Protein signals were developed with enhanced chemiluminescence.
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10

Immunohistochemical analysis of CXCR4, syntaxin, and neurofilament

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The following primary antibodies were used at the indicated dilutions: anti-CXCR4 (Abcam, cat. Ab 124824, 1:400), anti-syntaxin (Synaptic System, cat. 110111.00, 1:200), anti-Neurofilament (Abcam, cat. Ab 4680, 1:800). α-bungarotoxin (α-BTx) (cat. B35451, 1:200) and secondary antibodies Alexa-conjugated (1:200) were from Life Technologies. Unless otherwise stated, all other reagents were from Sigma. NUCC-390 was synthesized as previously described [46 (link)]
Purified Taipoxin and Oxyuranus scutellatus total venom were from Venom Supplies (Tanunda, South Australia). We estimated that our batch of taipoxin has a mouse LD50 of about 2 μg/Kg and that the Taipan venom is about 8 μg/Kg closely similar to value reported in the literature [47 (link)].
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