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Bestar qpcr mastermix

Manufactured by DBI Bioscience
Sourced in United States, Germany, China

Bestar™ qPCR MasterMix is a ready-to-use solution for quantitative real-time PCR (qPCR) analysis. It contains all the necessary components, including a hot-start DNA polymerase, dNTPs, and buffer, to perform qPCR reactions.

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41 protocols using bestar qpcr mastermix

1

Quantitative RT-PCR Analysis of CircRNA and miRNA Expression

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We extracted RNA from the tissues and treated cells with TRIzol Reagent (Invitrogen, Carlsbad, California, US). After examining the quality of total RNA with a NanoDrop 2000c spectrophotometer (Thermo Fisher), we used 3 μg total RNA as a template to produce complementary deoxyribonucleic acid (cDNA). We conducted qRT-PCR with BestarTM qPCR MasterMix (DBI Bioscience, China) on an ABI 7500 system (ABI Biosystems, Foster City, California, US). Primer sequences used in this study were as follows: glyceraldehyde 3-phosphate dehydrogenase (GAPDH), F: 5′-TGTTCGTCATGGGTGTGAAC-3′, R: 5′-ATGGCATGGACTGTGGTCAT-3′; U6, F: 5′-GCTTCGGCAGCACATATACTAAAAT-3′, R: 5′-CGCTTCACGAATTTGCGTGTCAT-3′; circ_0008945, F: 5′-CGGATGAAATCTGACCTACGA-3′, R: 5′-TCAGAGAGATCGGGACATCTG-3′; miR-338-3p, F: 5′-TGCGGTCCAGCATCAGTGAT-3′, R: 5′-CCAGTGCAGGGTCCGAGGT-3′; HOXA3, F: 5′-TCATTTAAGAGCGCCTGGACA-3′, R: 5′-GAGCTGTCGTAGTAGGTCGC-3′. We quantified gene expression using the 2−ΔΔCt method.
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2

Quantification of LGALS2 Gene Expression

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Trizol (Invitrogen, USA) was used to extract the total cellular RNA, after which the cDNA was prepared with a BestarTM qPCR RT kit (DBI Bioscience, #2220, Germany). The primers were as follows: LGALS2-F 5'-CATGACGGGGGAACTTGAGG-3', LGALS2-R 5'-AGGTTCAGCTTGTCTGTCCC-3', GAPDH-F 5'-GACAGTCAGCCGCATCTTCT-3', and GAPDH-R 5'-GCGCCCAATACGACCAAATC-3'. BestarTM qPCR MasterMix (DBI Bioscience, #2043, Germany) was used to assess gene expression via qPCR, with GAPDH as the normalization control. Relative expression levels were detected via the 2−ΔΔCt method.
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3

Quantification of Circular RNA and Genes in CRC

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Total RNAs of CRC tissue samples and cell lines were extracted using TRIzol reagent (Invitrogen, Carlsbad, CA, USA), according to the manufacturer’s instructions. After determining the quality of the RNA with NanoDro2000c (Thermo Scientific, Waltham, MA, USA), 2 μg of extracted RNAs were used as the template to synthesis cDNA using the BestarTM qRT-PCR kit (#2220) (DBI Bioscience, Ludwigshafen, Germany). RT-PCR was performed using BestarTM qPCR MasterMix (#2043) (DBI Bioscience, Ludwigshafen, Germany) on an ABI 7500 system (ABI Biosystems, Foster City, CA, USA). The primer sequences used in this study are shown in Table 1. The expression of circular RNA 0079993 (circ_0079993), POLR2J4, and CREB1 were normalized to GAPDH, and gene expression was quantified using the 2−ΔΔCt method.
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4

Quantifying miR-34c and HMGB1 in NSCLC

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The total RNA of NSCLC and normal tissue samples, as well as treated and non-treated NSCLC cells was extracted with TRIzol reagent (Invitrogen, Carlsbad, CA, USA). After determining the quality of the extracted RNA with a NanoDrop2000c spectrophotometer (Thermo Scientific, Waltham, MA, USA), 2 μg of total RNA was used as a template for the reverse transcription of cDNA that was performed using a BestarTM qPCR RT Kit (#2220, DBI Bioscience, China). The RT-PCR was performed using BestarTM qPCR MasterMix (#2043, DBI Bioscience, China) on an ABI7500 system for purposes of quantifying the levels of miR-34c and HMGB1 in NSCLC tissues and cells. The sequences of the primers used were as follows: GAPDH, F: 5ʹ-TGT TCG TCA TGG GTG TGA AC-3ʹ, R: 5ʹ-ATG GCA TGG ACT GTG GTC AT-3ʹ; U6, F: 5ʹ- CTC GCT TCG GCA GCA CA −3ʹ, R: 5ʹ-AAC GCT TCA CGA ATT TGC GT-3ʹ; miR-34c, F: 5ʹ- ACACTCCAGCTGGGAGGCAGTGTAGTTAGCTG −3ʹ, R: 5ʹ- CTCAACTGGTGTCGTGGA −3ʹ, RT: 5ʹ-CTC AAC TGG TGT CGT GGA GTC GGC AAT TCA GTT GAG GCA ATC AG-3ʹ; HMGB1F: 5ʹ-CTC GCT TCG GCA GCA CA-3ʹ, R: 5ʹ-AAC GCT TCA CGA ATT TGC GT-3ʹ. The level of HMGB1 expression was normalized to that of GAPDH, and miR-34c expression was normalized to that of U6. Gene expression was quantified using the 2−ΔΔCt method.
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5

Quantitative RT-PCR Analysis of Gene Expression

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Total RNAs from treated BC cell lines and tissues were all prepared using TRIzol reagent (Takara, Japan), and the cDNA was produced by 50 ng total RNAs using a BestarTM qPCR RT kit (DBI Bioscience, China). The amplification was performed on the ABI PRISM 7500 Sequence Detection System (Life Technologies, USA) with the BestarTM qPCR MasterMix (DBI Bioscience) according to the instructions obtained from the manufacturers. All primers used in the present study were synthesized by Sangon (Shanghai, China), and the sequence of primers were: GAPDH: F, 5′-TGT TCG TCA TGG GTG TGA AC-3′, R, 5′-ATG GCA TGG ACT GTG GTC AT-3′; U1: F, 5′-GGG AGA TAC CAT GAT CAC GAA GGT’, R, 5′-CCA CAA ATT ATG CAG TCG AGT TTC CC-3′; miR-933: F, 5′-ATT ATA TGT GCG CAG GGA GAC C-3′, R, 5′-GCG AGC ACA GAA TTA ATA CGA CTC ACT ATA GG-3′; TFAP2A-AS1: F, 5′-CTT GAC AGC TCC AGG GGT TA-3′, R, 5′-TCT AGA CTT GCA GGC ACA CA-3′; CDK6 F, 5′-GGC CTC AGC AGC CGC CTT AAG CTG A-3′, R, 5′-CAG GAA AGA GTT TCT GAC AAA TT-3′; cyclin D1 F, 5′-GCT GCG AAG TGG AAA CCA TC-3′, R, 5′-CCT CCT TCT GCA CAC ATT TGA A-3′; cyclin E1 F, 5′-GCC GCA GTA TCC CCA GCA AA-3′, R, 5′-TCG CAC CAC TGA TAC CCT GA-3′.
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6

Quantitative Analysis of GC Transcripts

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After being lysed with TRIzol buffer (#9109, Takara, Japan), total RNAs of GC tissues and cell lines were extracted and reverse transcribed into cDNA by using a Bestar™ qPCR RT kit (#2220, DBI Bioscience, China). qRT-PCR assay was carried out with BestarTM qPCR MasterMix (#2043, DBI Bioscience, China) on the ABI7300 system. The sequence of primers used in this study is shown in Table 1. Expression of miRNA was normalized to U6, and expression of mRNA was normalized to GAPDH.
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7

Quantitative Analysis of Gene Expression

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ID1 expression was assayed as described. Total RNA was isolated using the Trizol reagent RNA extraction kit (Takara Bio Inc., Shiga, Japan) according to the manufacturer’s protocol. Then, cDNA was synthesized using the BestarTM qPCR RT kit (DBI Bioscience), following the manufacturer’s instructions. Quantitative real-time PCR analysis was performed with the BestarTM qPCR MasterMix (DBI Bioscience). Each sample was run in triplicate for each gene. Transcript levels were normalized to the housekeeping gene phosphoglycerate kinase (PGK) and analyzed by the relative quantification 2−ΔΔCt method. The PCR primers were as follows: GAPDH: forward: 5′-TGTTCGTCATGGGTGTGAAC-3′, reverse:5′-ATGGCATGGACTGTGGTCAT-3′, Vimentin:forward:5′-AGTCCACTGAGTACCGGAGAC-3′, reverse:5′-CATTTCACGCATCTGGCGTTC-3′, E-cadherin: forward:5′-ATTTTTCCCTCGACACCCGAT-3′, reverse:5′-TCCCAGGCGTAGACCAAGA-3′, ID1:forward:5′-CTGCTCTACGACATGAACGG-3′, reverse:5′-GAAGGTCCCTGATGTAGTCGAT-3′. The products were resolved using gel electrophoresis (1.5% agarose gel).
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8

Lung Gene Expression Analysis

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The second part of the right lung tissue was frozen in liquid nitrogen for a few minutes and then transferred to –80 °C for real-time quantitative PCR (RT-qPCR) and western blot (WB) analysis. The expression levels of STAT5, RORγt, and FOXP3 in the right lung tissues were evaluated by qPCR analysis. Moreover, the expression levels of CNR2, STAT5, RORγt, and FOXP3 in the cells were also assessed. A total of 5 µg RNA from each group were obtained by TRIzol (#9109, TAKARA, China) and used as the template to form cDNA using BestarTM qPCR RT kit (#2220, DBI Bioscience, China). Subsequently, cDNA was amplified by qPCR on a Stratagene Mx3000P real-time PCR instrument (MX3000P, Stratagene, USA) using BestarTM qPCR Master Mix (#2043, DBI Bioscience) according to the manufacturers’ protocols. The sequence of primers for CNR2, STAT5, RORγt, and FOXP3 is provided in Table S1. GAPDH was used as endogenous control. The reactions and PCR amplification were performed under standard techniques (26 (link)).
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9

RNA Extraction and qPCR Analysis

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HCC and para-carcinoma tissues were ground at a low temperature. TRIzol reagent (Invitrogen, USA) was used to extract total RNAs from the ground tissues and the treated HEP 3B cells according to the instruction. The obtained RNAs were quantitatively determined using a NanoDro2000c (Thermo Scientific). 1.0 µg RNA was used to synthesize cDNA using the reverse transcription kit (Takara, Japan). The expression level of each indicator was examined and quantified using BestarTM qPCR MasterMix (DBI Bioscience) based on the specification provided by the supplier. GAPDH was used as an internal control. The sequences of primers are listed in Table 1.
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10

Extraction and Analysis of Total RNAs

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After exacted the total RNAs from CC cells using TRIzol reagent (Invitrogen), we reversely transcribed 2 μg of total RNAs into cDNA using High‐Capacity cDNA Reverse Transcription Kit (Applied Biosystems). RNaseR treatment was carried out by incubating RNA samples with 2 U RNaseR (Epicenter) for 1 hour at 37°C. RT‐PCR was conducted using BestarTM qPCR MasterMix (DBI Bioscience) on an ABI7500 system. The relative fold‐change was calculated through 2−ΔΔCt method, and the primers were obtained form Invitrogen (Table 1).
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