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219 protocols using bapta am

1

Primary Neuron Culture and BAPTA-AM Treatment

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The protocol for primary cortical neuron culture preparation was adapted from Li et al.[29 (link)] (full description in supplement). Briefly, embryos were removed at E19 and brains were extracted. Neurons were dissociated with needles of increasing gage. Cells were grown in 6 well plates coated with poly-D-lysine. Cultures were grown in Neurobasal media that was partially changed regularly.
Experiments were performed at 13 days-in-vitro (DIV). BAPTA-AM (Millipore 196419) was dissolved in DMSO for a stock concentration of 10 mM. The stock was diluted in culture media and cells were incubated in 10 μM BAPTA-AM or an equivalent volume of DMSO (0.1% DMSO) for 1 hr. Following incubation, cells were rinsed with ice-cold PBS, then lysed in warmed 1% SDS buffer (see supplement). Three independent biological replicates were utilized in the experiment and 6 wells per condition were analyzed in each replicate (total 18 wells per condition).
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2

Optimized Cortical Neuron Culture Protocol

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The protocol for primary cortical neuron culture preparation was adapted from Li et al29 (full description in Supplement). Briefly, embryos were removed at E19 and brains were extracted. Neurons were dissociated with needles of increasing gauge. Cells were grown in six‐well plates coated with poly‐D‐lysine. Cultures were grown in Neurobasal media that was partially changed regularly.
Experiments were performed at 13 days‐in‐vitro (DIV). BAPTA‐AM (Millipore 196419) was dissolved in dimethyl sulfoxide (DMSO) for a stock concentration of 10 mM. The stock was diluted in culture media and cells were incubated in 10 μM BAPTA‐AM or an equivalent volume of DMSO (0.1% DMSO) for 1 hour. Following incubation, cells were rinsed with ice‐cold phosphate‐buffered saline (PBS) and then lysed in warmed 1% sodium dodecyl sulfate (SDS) buffer (see Supplement). Three independent biological replicates were utilized in the experiment and six wells per condition were analyzed in each replicate (total 18 wells per condition).
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3

Isolation and Differentiation of Primary Adipocytes

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Primary adipocytes were isolated and cultured as previously described (Arcinas et al., 2019 (link); Fu et al., 2018 (link)). Briefly, ∼10-d-old mice were sacrificed. iWATs were harvested and digested with collagenase I (0.2%). Primary adipocytes were filtered through 70 μm and then collected by centrifugation at 1,300 g for 5 min. Primary adipocytes were cultured to confluence in high DMEM with 10% fetal calf serum (Gibco) and induced to differentiation for 2 or 3 days with high DMEM containing 10% FBS, insulin 850 nM (Sigma-Aldrich), dexamethasone 0.5 μM (Sigma-Aldrich), isobutyl methylxanthine 250 μM (Sigma-Aldrich), and Rosiglitazone 1 μM (Sigma-Aldrich). The induction medium was replaced with high DMEM containing 10% FBS and 160 nM insulin for another 2 or 3 d. Then cells were incubated in high DMEM with 10% FBS for 1–2 d. Differentiated white adipocytes were treated with DMSO (Sigma-Aldrich), TG (Sigma-Aldrich), CL (Sigma-Aldrich), or FSK (Sigma-Aldrich) for 4 h before harvest. For BAPTA-AM (Sigma-Aldrich) studies, cells were pre-incubated with BAPTA-AM for 2 h before CL or FSK treatments.
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4

Evaluating Cell Proliferation and Migration

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To evaluate cell proliferation upon different treatments, 1 × 105 cells/well were seeded (t = 0 h) in six well plates and treated with either DMSO, BAPTA-AM (10 μM, Sigma-Aldrich), U-73343 (2.5 µM, Sigma Aldrich), U-73122 (2.5 µM, Sigma-Aldrich), Etomoxir (20 μM, Sigma-Aldrich). 24 h or 48 h later, cells were harvested and counted, normalizing their number to t = 0 h.
For cell migration, MDA-MB-231 CTRL and MDA-MB-231 MCU-KO cells were seeded at low confluency (30%) in 6-well plates. 24 h later they were treated either with DMSO, BAPTA-AM (10 μM, Sigma-Aldrich), U-73343 (2.5 µM, Sigma Aldrich), U-73122 (2.5 µM, Sigma-Aldrich), Etomoxir (20 μM, Sigma-Aldrich) or Oleic acid (500 μM, Sigma Aldrich) in 2% FCS medium. At the same time a linear scratch was obtained on cell monolayers through a vertically held P200 tip. Images were taken 24 h later. “TScratch” software (https://cse-lab.ethz.ch/software/) was used for automated image analysis.
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5

Calcium Signaling Pathway Characterization

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Cells on a glass dish were washed three times with D-Hanks' solution and incubated with 5 μM Fluo 3-AM (Dojindo Laboratories, Japan) for 30 min at 37℃, followed by three washes and additional incubation in normal Hanks' solution for 15 min. To eliminate the effects of other Ca2+ channels or intracellular Ca2+ stores release, 1 mM extracellular calcium chelator EGTA, 10 μM intracellular calcium chelator BAPTA-AM (Cells were first treated with 10 uM BAPTA-AM in DMEM/high glucose medium without FBS for 30 min, then the subsequent experiments were performed), 5 μM L-type calcium channel blocker verapamil (Sigma, USA) and 5 μM selective Na+/H+ exchanger inhibitor 5-(N, N-Hexamethylene) amiloride (HMA, Alomone Labs, Israel) were added to the extracellular fluid.Using a laser scanning confocal microscope, Fluo 3-AM was excited at 488 nm, and emission was measured at 510 nm.
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6

Investigating Cell Migration and Invasion

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SKOV3-Con-sh, SKOV3-TRPM7-sh, OVCAR3-Con-sh and OVCAR3-TRPM7-sh cells (7 × 104/well) were cultured in the upper chamber of 24-well transwell plates (8 μm, Corning, USA) in the presence or absence of 70 ng/ml EGF or 20 μM BAPTA (Sigma). The bottom chambers were filled with complete medium. After culture for 24 h, the cells on the surface of the upper chamber were removed with a cotton swab and the migrated on the bottom surface of the upper chamber were fixed in 4% paraformaldehyde and stained with 0.1% crystal violet. The migrated cells were counted under a microscope in a blinded manner. Similarly, these cells (1.4 × 105/well) were tested for their invasion using Matrigel (BD Biosciences) coated upper chambers. In addition, SKOV3 and OVCAR3 cells were tested for their migration and invasion in the presence or absence of 30 μM MK886 and/or 70 ng/ml EGF, 30 μM MK886 and/or 20 μM BAPTA-AM, 20 μM BAPTA-AM and/or 10–15 μM LY294002 (Sigma), or 20 μM BAPTA-AM and/or 70 ng/ml IGF (Peprotech, New Jersey, USA).
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7

Modulation of Plasmodium Sporozoite Egress

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For inhibition assays, the intra Ca2+ chelator BAPTA-AM (Sigma, St. Louis, MO, United States) and phosphoinositide specific phospholipase C inhibitor U-73122 (Sigma) were used to evaluate the effect of Ca2+ on sporozoite egress. In another experiment, cytochalasin D (CytoD; Merck, Darmstadt, Germany) was used to block parasitic motility. Infected PCKs were pre-treated with 10 μM BAPTA-AM, U-73122, or CytoD prepared in dimethyl sulfoxide (Sigma) for 30 min. Then, the cell cultures were incubated with 40 mM SNP for 30 min, and the number of egressed sporozoites was evaluated as described above.
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8

Modulating HBMEC Responses to Ischemia

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HBMEC were purchased from ScienCell and grown to subconfluence in its specialised media (containing 10% FBS) before exposure to OGD (94.5% N2, 0.5% O2 and 5% CO2) or normoxia (75% N2, 20% O2 and 5% CO2) for 0.5 to 4 hours. These OGD conditions were used to mimic a severe ischaemic attack. In some experiments, OGD was followed by 20 hours of reperfusion in which the RPMI media (ischaemic culture medium lacking glucose, pyruvate and foetal bovine serum (FBS), Sigma) was replaced with fresh HBMEC cell media containing 5.5 mM glucose and 10% FBS before exposing cells to normoxic conditions. In other experiments, amiloride (uPA inhibitor, 2.5 µM, Sigma), apocynin (NADPH oxidase inhibitor, 1 mM, Sigma), BAPTA-AM (intracellular calcium chelator, 10 µM, Merck), bisindolylmaleimide (PKC inhibitor, 5 µM, Calbiochem), LY-333531 (PKC-β inhibitor, 1 µM, Enzo Life Sciences), CGP-53353 (PKC-βII inhibitor, 1 µM, Calbiochem) or RO-32-0432 (PKC-α inhibitor, 1 µM, Calbiochem) was also added to culture media during OGD or reperfusion stages. In other experiments, normoxic HBMEC were exposed to phorbol-12myristate-13-acetate (PMA, a PKC activator, 0.1 µM, Sigma) with/out BAPTA-AM.
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9

Murine Cytokine and Antibody Reagents for Platelet Studies

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All mouse cytokines were purchased from PeproTech (London, UK). The following antibodies and agonists were obtained from the specified suppliers: PAC-1 monoclonal antibody (mAb), anti-mouse P-selectin mAb (RB40.34), anti-paxillin mAb (clone 349), and anti-Hic-5 mAb (BD Biosciences, San Jose, CA); horseradish peroxidase-conjugated anti-green fluorescent protein (GFP) polyclonal antibody (Acris Antibodies, Himmelreich, Germany); phycoerythrin (PE)-Cy7-conjugated anti-mouse IgM (eBioscience, San Diego, CA); anti-talin mAb (clone 8D4); anti-phosphotyrosine mAb (clone 4G10), and BAPTA-AM (Millipore, Billerica MA); human fibrinogen and epinephrine (Sigma-Aldrich, St. Louis, MO); anti-vinculin mAb (V284) (Chemicon, Billerica, MA); anti-mouse GPVI mAb (Six.E10), anti-mouse GPIbα mAb (Xia.G5), and anti-mouse integrin αIIbβ3 mAb (Leo.D2 and clone JON/A) (Emfret Analytics, Eibelstadt, Germany); anti-α-actin mAb (D6F6), anti-FAK polyclonal antibody, and anti-Src mAb (32G6) (Cell Signaling Technology, Danvers, MA); anti-Rap1b polyclonal antibody and anti-protein kinase Cα mAb (M4) (Upstate Cell Signaling Solutions, Lake Placid, NY); allophycocyanin (APC)-conjugated anti-rat IgG polyclonal antibody (R& D Systems, Minneapolis, MN); convulxin (ALEXIS Biochemicals, Plymouth Meeting, PA); AYPGKF (Invitrogen, Carlsbad, CA); ADP (MC medical, Tokyo, Japan); U46619 (Cayman Chemical, Ann Arbor, MI).
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10

Measuring CaMKIIα Activity Oxidation

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CaMKIIα activity was measured by a commercial kinase activity kit (Promega, Madison, WI, USA). Briefly, 1 ng of CaMKIIα activity was assessed by the kinase ATP consumption kit (ADP-Glo Promega) and inferred from a consumption curve of 25 μM ATP/ADP at different ratios. The kinase was previously treated to induce its oxidation with 10 μM H2O2, free Ca2+ was chelated in some conditions using 2 mM BAPTA-AM (Millipore, Darmstadt, Germany) and the CaMKIIα inhibitor Kn-93 (MedChemExpress, Monmouth Junction, NJ, USA) was used at 1 μM. Then, the kit’s protocol was followed.
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