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Fmoc protected amino acids

Manufactured by GL Biochem
Sourced in China

Fmoc-protected amino acids are a class of chemical compounds used in solid-phase peptide synthesis. They serve as building blocks for the construction of peptide and protein structures. These amino acids are protected by the Fmoc (fluorenylmethyloxycarbonyl) group, which allows for controlled and stepwise assembly of peptides during the synthesis process.

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28 protocols using fmoc protected amino acids

1

Solid-Phase Synthesis of EM-1 and EM-2 Peptides

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EM-1 and EM-2 were prepared by manual solid-phase synthesis using standard N-fluorenylmethoxycarbonyl (Fmoc) chemistry as reported in our previous study [32 (link)]. Fmoc-protected amino acids (GL Biochem Ltd., China) were coupled with Rink amide 4-methybenzhydrylamine (MBHA) resin (Tianjin Nankai Hecheng Science & Technology Co., Ltd., China). The crude peptides were purified by preparative reversed-phase HPLC (RP-HPLC) and determined by electrospray ionization mass spectrometer (ESI-Q-TOF maXis-4G, Bruker Daltonics).
Naloxone, β-FNA, nor-binaltorphimine (nor-BNI), and naltrindole (NTI) were obtained from Sigma-Aldrich. The selective p38 MAPK inhibitor SB203580 was purchased from Beyotime Institute of Biotechnology and dissolved in 1% DMSO in saline. All other drugs were dissolved in sterilized saline and stored at − 20 °C.
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2

Glioblastoma Treatment Protocol with Nanoparticles

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Fmoc-protected amino acids were purchased from GL Biochem Ltd (Shanghai, China). HSPC (hydrogenated soy phosphatidylcholine) and mPEG2000-DSPE were obtained from Lipoid GmbH (Ludwigshafen, Germany). Cholesterol was supplied by Sinopharm Chemical Reagent Co. Ltd. (Shanghai, China). Near infrared dye DiR was obtained from Invitrogen, USA. Sephadex G50 and 5-carboxyfluorescein (FAM) were provided by Sigma (St. Louis, MO). Doxorubicin hydrochloride was supplied by Dalian Meilun Biotech Co., Ltd (Dalian, China). Rat tail collagen Type I was purchased from Shengyou Biological Technology Co. (Hangzhou, China). DNase I and collagenase were supplied by Dingguo Biological Technology Co. Ltd (Shanghai, China).
Human glioblastoma cells (U87), human umbilical vascular endothelial cells (HUVECs) and brain capillary endothelial cells (bEnd.3) were obtained from Shanghai Institute of Cell Biology, cultured in special Dulbecco’s modified Eagle medium (Gibco) supplemented with 10% fetal bovine serum (FBS, Gibco). ICR mice and BALB/c nude mice aged 4-6 weeks were supplied by Shanghai SLAC Laboratory Animal Co. Ltd (Shanghai, China) and housed under SPF conditions. All animal experiments were carried out in accordance with the guidelines evaluated and approved by the Ethics Committee of Fudan University.
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3

Peptide Synthesis and Characterization

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Fmoc-protected amino acids were purchased from GL Biochem LTD (Shanghai, China). DIC and Oxyma Pure were obtained from Iris Biotech GmbH (Marktredwitz, Germany). The H-Rink Amide-ChemMatrix® resin was acquired from Sigma Aldrich (Taufkirchen, Germany). DMF used for peptide synthesis was supplied by Fisher Scientific (Schwerte, Germany) and was of peptide grade quality. Acetonitrile used for HPLC was supplied by Fisher Scientific (Schwerte, Germany) with HPLC grade quality. Water used for HPLC and reactions was obtained by purifying deionized water with the purification device Simplicity from Millipore. All other reagents were supplied by Sigma Aldrich (Taufkirchen, Germany), Thermo Fisher Scientific (Langenselbold, Germany), VWR International (Darmstadt, Germany) and Carl Roth (Karlsruhe, Germany). All reagents were of synthesis grade quality and were used as supplied. Unless otherwise stated, biophysical measurements were performed in phosphate buffered saline (PBS, 8.2 mM Na2HPO4, 1.8 mM K2HPO4, 137 mM NaCl, 2.7 mM KCl, pH 7.4). Peptide concentrations were determined by UV-absorbance at 280 nm (ε280(Trp) = 5690 mol–1 cm–1, ε280(Tyr) = 1280 mol–1 cm–1), and, alternatively, at 214 nm using a NanoDrop 2000 spectrophotometer from Thermo Scientific. Extinction coefficients at 214 nm were calculated according to Kuipers et al.50 (link)
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4

Fmoc-protected amino acid synthesis

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Fmoc-protected amino acids were purchased from GL Biochem. Fmoc-N-ε-(trimethyl)-l-lysine chloride (Fmoc-Lys(Me3)-OH) were purchased from Chem-Impex International (Wood Dale, IL). All the other chemical reagents and solvents were purchased from Sigma-Aldrich and used without further purification. In-solution reactions were monitored by thin-layer chromatography (TLC) silica gel 60 F254 from Merck. Plates were visualized by UV light or 1% KMnO4. Flash column chromatography was carried out using silica gel purchased from Grace.
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5

Peptide Synthesis and Characterization

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Solvents for RP-HPLC were acquired as HPLC grade and used without further purification. All other reagents were used as supplied. Conventional Fmoc protected amino acids, O-(6-chlorobenzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HCTU) and O-(7-azabenzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HATU) were purchased from GL Biochem (Shanghai, China). N-Methylmorpholine (NMM), N,N′-diisopropylcarbodiimide (DIC), 6-chloro-1-hydroxybenzotriazole (6-Cl-HOBt), piperidine and Tris free base were purchased from Aldrich (St Louis, USA). Dichloromethane (DCM), and sodium chloride (NaCl) were purchased from ECP limited (Auckland, New Zealand). Hydrochloric acid (HCl) and sodium hydroxide (NaOH), dimethylformamide (DMF, AR grade) and acetonitrile (ACN, HPLC grade) were purchased from Scharlau (Barcelona, Spain). Trifluoroacetic acid (TFA) was purchased from Oakwood Chemical (River Edge, USA). Triisopropylsilane (TIPS) was purchased from Alfa Aesar (Wardhill, MA). The aminomethyl polystyrene resin was purchased from Rapp Polymer GmbH (Tübingen, Germany). Bovine lactoferrin (LF) was kindly donated by Fonterra Co-operative Group (New Zealand).
TEM images were analyzed with ImageJ 1.50i.33 (link)
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6

Solid-phase Peptide Synthesis and Characterization

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Rink amide resins, Fmoc-protected amino acids, and other reagents for peptide synthesis were purchased from GL Biochem, Shanghai, China. HPLC-grade ACN was obtained from Sigma-Aldrich, St. Louis, MO, USA. Lipofectamine 2000 was purchased from Life Technologies, Chagrin Falls, OH, USA. All reagents used were analytical grade. The HEK293 cell strain was offered by the Cell Center of Chinese Academy of Sciences, Shanghai, China. Standard μ-conotoxin GIIIA was purchased from Bachem, Bubendorf, Switzerland.
Solid-phase peptide synthesis was performed on a CEM Liberty peptide synthesizer (CEM, Matthews, NC, USA). MALDI-TOF-MS was measured on a Bruker ultraflex TOF/TOF mass spectrometer (Bruker Daltonics, Billerica, MA, USA) with α-cyano-4-hydroxycinnamic acid as the matrix. Reversed-phase HPLC was performed on an Agilent 1100 system with a dual wavelength UV detector (Agilent, Santa Clara, CA, USA). C18 Vydac columns were purchased from Grace, Deerfield, IL, USA. Whole cell patch-clamp recordings were conducted on an Axon700B amplifier (Molecular Devices, Sunnyvale, CA, USA). The MF-900 Microforge and Shutter P-97 Micropipette puller were the products of Narishige Group, Tokyo, Japan and Sutter Instrument, Novato, CA, USA, respectively.
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7

Peptide Synthesis and Characterization

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All Fmoc protected amino acids were purchased from GL Biochem and resins were purchased from Novabiochem and used without further purification. The coupling reagent 2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate(HBTU) and 1-[bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium3-oxide hexafluorophosphate (HATU), were purchased from Novabiochem and hydroxybenzotriazole (HOBt) was purchased from SRL (Sisco Research laboratory). The anhydrous dimethylformamide (DMF) and dichloromethane (DCM) were purchased from Acros Organics and anhydrous N,N-diisopropylethylamine (DIPEA), hexamethyldisilazane (HMDS), transglutaminase (guinea pig liver), fibrinogen (human plasma), thrombin (bovine plasma) and 2,4,6-trinitrobenzenesulfonic acid (TNBS) were obtained from Sigma-Aldrich. HPLC grade methanol and ethanol were procured from Merck-Milli pore. All procured chemicals are certified to be ~98–99% purity.
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8

Peptide Synthesis on 2-Chlorotrityl Resin

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Fmoc protected amino acids, 2‐chlorotrityl resin, O‐benzotriazole‐N,N,N,N‐tetramethyl‐uronium‐hexafluoro‐phosphate (HBTU), and 1‐hydroxy‐7‐azabenzotriazole (HOAt) were purchased from GL Biochem (Shanghai) Ltd. All solvents and the other chemicals were purchased from Merck, at analytical grade. High purity Milli‐Q‐water with a resistivity greater than 18 M Ω cm was obtained from an in‐line Millipore RiOs/Origin system. 1H‐NMR and 13C‐NMR spectra were recorded at 400 MHz on a Varian Innova Instrument with chemical shift reported as ppm (with tetramethylsilane as internal standard). ESI‐MS spectra were recorded on an Agilent 6120 single quadrupole LC‐MS system. Optical microscope images were acquired on a Leitz Labovert instrument with a 20× magnification objective on a drop of fresh samples deposited on a clean glass slide.
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9

Fmoc-Based Peptide Synthesis and Purification

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All of the peptides were manually synthesized by the standard Fmoc-based solid-phase peptide synthesis (Fmoc SPPS). Rink amide-MBHA resin and Fmoc-protected amino acids were purchased from GL Biochem (Shanghai) Ltd. Other chemicals were purchased from Sigma-Aldrich. For all of the peptides, amide-MBHA resin was used. Crude peptides were further purified by RP-HPLC. The identification of the pure peptides was confirmed by ESI-MS and analytical RP-HPLC.
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10

Purification and Characterization of Peptides

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All NMR spectra were recorded on a Bruker 300 or 400 MHz spectrometer. The chemical shifts were reported in ppm, and J values were reported in Hz. Peptides were purified on a Grace VYDACÒ 218TP152025 C18 column connected to a preparative-HPLC system with Waters 2535 Quaternary Gradient Module, Waters 515 HPLC pump, Waters SFO system Fluidics Organizer and Waters 2767 Sample Manager. Analytical HPLC trace after purification was obtained using a Grace VYDACÒ 218TP C18 5m column connected to an HPLC system with Agilent 1260 Infinity Quaternary Pump VL, Agilent 1260 Infinity Manual Injector and Agilent 1260 Infinity Variable Wavelength Detector. The outlet of the above HPLC system was connected to Thermo Finnigan LCQ Deca XP to obtain MS spectrums of purified peptides.
Starting materials for organic synthesis were purchased from common commercial suppliers including Sigma-Aldrich, TCI and Alfa and used without further purification. All reactions were monitored by TLC Silica gel 60 F254 from Merck. Flash column chromatography was performed with silica gel purchased from Grace (40-63 micron). All Fmoc-protected amino acids for and coupling reagents for solid phase peptide synthesis were purchased from GL Biochem (Shanghai, China).
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