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Superscript 3 reverse transcription reagent

Manufactured by Thermo Fisher Scientific
Sourced in United States

Superscript III Reverse Transcription Reagent is a laboratory product used for the conversion of RNA to complementary DNA (cDNA). It enables the synthesis of first-strand cDNA from total RNA or poly(A)+ RNA templates.

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13 protocols using superscript 3 reverse transcription reagent

1

Quantitative Gene Expression Analysis

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Total RNA extractions were performed using Roche High pure RNA isolation kit. Superscript III Reverse Transcription Reagents (Invitrogen) and random hexamers were used to prepare cDNAs. For qPCR quantification, 5 μl SYBR Green I Master mix (Roche), ROX reference dye, 1 μl IDT PrimeTime Primer set for corresponding assays, 1 μl cDNA were mixed for PCR amplification, and detected by a Stratagene Mx3005p instrument. For quantitative analysis, Pou5f1, Gata2, and Gata6 expression was normalized to Actb expression and for Ccna2, the absolute value was compared to the untreated Triptolide control. For RNA-seq of triptolide experiments, polyA+ RNA was isolated using Dynabeads Oligo(dT)25 (Invitrogen) and Superscript III Reverse Transcription Reagents (Invitrogen) was used to prepare cDNAs. Libraries were then constructed from cDNAs and prepared according to the manufacturer’s instructions (Illumina) and as described in the ChIP-seq Library prepartion section above.
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2

Total RNA Extraction and qRT-PCR Analysis

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Total RNA from CFPAC-1 and PANC-1 cells was extracted using the TRIzol Reagent (Life Technologies Inc., Carlsbad, CA, USA), as instructed by the manufacturer. RNA was used for cDNA synthesis with the Superscript III Reverse Transcription Reagent (Life Technologies). qRT-PCR analysis with SYBR Green was performed on the total RNA extracted from cell lines and tissues by means of an ABI7500 real-time PCR detection system (Applied Biosystems, Foster City, CA, USA). β-Actin or U6 small nuclear RNA served as an endogenous control. Each assay was conducted in triplicate and the 2 − ΔΔCt method was used to calculate relative expression.
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3

Quantifying miR-139-5p in HCC

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The total RNA from HCC tissues or cell lines was extracted by using TRIzol (Invitrogen, CA, USA), as instructed by the manufacturer. Complementary DNA (cDNA) was synthesized by using the Superscript III Reverse Transcription Reagent (Life Technologies, CA, USA). Quantitative real-time PCR (qRT-PCR) was performed by using the TaqMan Power SYBR Green PCR Mix kit (Invitrogen, CA, USA) on an Applied Biosystems 7500 (Applied Biosystems, MA, USA). The expression level of miR-139-5p was normalized to the expression level of U6 by using the 2−ΔΔCT method.
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4

Quantitative RNA Expression Analysis

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Total RNA was extracted using TRIzol reagent (Life Technologies Inc., Carlsbad, CA, USA), according to the manufacturer’s instructions. RNA was reverse transcribed into cDNA using the Superscript III Reverse Transcription Reagent (Life Technologies). qRT-PCR analysis was performed using SYBR Green chemistry on an ABI7500 real-time PCR detection system (Applied Biosystems, Foster City, CA, USA). β-Actin or U6 small nuclear RNA served as the endogenous control. Each experiment was performed in triplicate, and the 2−ΔΔCt method was used to calculate relative expression.
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5

Total RNA Extraction and qRT-PCR Analysis

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Total RNA was extracted using the TRIzol Reagent (Life Technologies Inc., Carlsbad, CA, USA), which was maintained at −80°C refrigerator for preservation. RNA was used for cDNA synthesis with the Superscript III Reverse Transcription Reagent (Life Technologies). MiRcute miRNA isolation kit (Tiangen, China) was used for miRNA extraction. Qiagen miScript Reverse Transcription kit (Qiagen, Germany) was used for reverse transcribe. Following the formula recommended by FastStart Universal SYBR Premix Ex Taq™ II (Takara, Japan), the formula containing 14 μL 2 × SYBER Green master mix, 1 μL forward primer (10 μM), reverse primer 1 μL (10 μM), 3 μL cDNA template, 6 μL ddH2O was set up. Later, the reaction system was reacted in Bio-Rad IQ5 thermocycler (Bio-Rad, CA, USA) following the procedures: 90 s at 95°C for start, 25 s at 95°C, 20 s at 65°C, 30 s at 72°C for the amplification. Forty cycles were performed. GAPDH and U6 were used as controls.
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6

Total RNA Extraction and RT-qPCR Analysis

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Total RNA from the PC cell lines was extracted using a ZEB kit (Ebioscience). RNA was used for cDNA synthesis with the Superscript III Reverse Transcription Reagent (Life Technologies). The real-time PCR reaction was performed according to the protocol of the SYBR Premix Ex Taq kit (Takara) and using a StepOnePlus Real-Time PCR System (Applied Biosystems, USA). Primers are shown in Table S1.
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7

Quantitative RT-PCR from Mouse Liver RNA

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Total RNA was extracted from mouse liver tissue with TRIzol (Invitrogen, Carlsbad, CA, USA). cDNA synthesis was performed with Superscript III reverse‐transcription reagent (Invitrogen) using 1 μg RNA. Quantitative real‐time PCR was conducted with SYBR Green I dye (Roche, Basel, Switzerland). PCR cycling started at 95°C for 30 seconds followed by 40 cycles of 95°C for 5 seconds and 60°C for 30 seconds, with the last step at 72°C for 20 min. The primer sequences used were listed in our previous study.9 Relative mRNA level changes were analyzed using the 2−ΔΔCt method.
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8

Quantitative RT-PCR Analysis of PC12 Cells

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Total RNA was extracted from PC12 cells by using TriZol RNA extraction reagent (Invitrogen, CA, USA). Single-strand cDNA was synthesized using SuperScript III reverse transcription reagent (Invitrogen, CA, USA) according to the manufacturer's protocol. The specific primer sequences for each PCR reaction were listed in Table 1. The quantitative real-time PCR was performed on an ABI 7300 PCR System (Applied Biosystems, USA) using GoTaq qPCR Master Mix (Promega BioSciences, USA). Standard curves of the target genes were constructed with results of parallel PCR reactions performed on serial dilutions of a standard DNA. Fold change values were calculated by comparative Ct analysis after normalizing for the quantity of an endogenous reference gene β-actin mRNA in samples.
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9

Quantitative Analysis of Apoptosis-Related Genes

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Total RNA was extracted from U251 cells by using TriZol RNA extraction reagent (Invitrogen). Single-strand cDNA was synthesized using SuperScript® III reverse transcription reagent (Invitrogen) according to the manufacturer’s protocol. hnRNP A2/B1 was detected using the forward primer and the reverse primer 5’-GCAACCTTCTAACTACGGTCCA-3’, 5’-ATCTGCTCTGGTGTCTTCTGC-3’, Bcl-x was detected using the forward primer 5’-GGGTCTAGAAGTGGATGGTCAGTGTCTGGT-3’ and the reverse primer 5’-GGGGAATTCTTGGACAATGGACTGGTTGA-3’, where GAPDH was detected using the forward primer 5’-TGTTGCCATCAATGACCCCTT-3’ and the reverse primer 5’-CTCCACGACGTACTCAGCG-3’. Both Bcl-xL (779 bp) and Bcl-xS (590 bp) were amplified from the Bcl-x primers. PCR amplification was set as follows: after an initial denaturation at 94 °C for 2 min, 30 cycles of 94 °C for 30 s, 55 °C (hnRNP A2/B1)/63 °C (Bcl-x)/55 °C (GAPDH) for 30 s, and 72 °C for 60 s. The reaction ended with a final extension step at 72 °C for 5 min. PCR products were separated by gel electrophoresis in 1.2% agarose containing ethidium bromide and visualized under UV light.
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10

Quantification of PI16 mRNA Expression

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Extraction of total RNA from snap frozen liver tissue was performed with TRIzol (Invitrogen, Carlsbad, CA, USA). Synthesis of cDNA was conducted using Superscript III reverse‐transcription reagent (Invitrogen) with 1 μg RNA. Quantitative real‐time PCR was performed with the SYBR Green I dye (Roche, Basel, Switzerland). The PCR cycling started at 95°C for 30 seconds followed by 40 cycles of 95°C for 5 seconds, 60°C for 30 seconds, with a last step at 72°C for 20 minutes. The primer sequences used were as follows: PI16 (forward), 5′‐ATATGGATCCACCATGCACGGCTCC‐3′; PI16 (reverse), 5′‐CGAATTCTCAGAAGATTCCAGCCAACACC‐3′; β‐actin (forward), 5′‐GTGGGGCGCCCCAGGCACCA‐3′; β‐actin (reverse), 5′‐CTCCTTAAGTCACGCACGATTTC‐3′. Relative mRNA levels changes were analyzed using 2−ΔΔCt method.
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