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Phosphate buffered saline (pbs)

Manufactured by Santa Cruz Biotechnology
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Phosphate-buffered saline (PBS) is a commonly used buffer solution in biological research and laboratory applications. It maintains a stable pH and osmolarity, making it suitable for a variety of cell-based experiments and assays. PBS is a simple solution composed of sodium chloride, potassium chloride, sodium phosphate, and potassium phosphate.

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50 protocols using phosphate buffered saline (pbs)

1

Cryopreserved Organ Sectioning and Staining

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After harvesting, organs were fixed in 4% paraformaldehyde (PFA) solution in PBS (Santa Cruz Biotechnology, Inc., Heidelberg, Germany) for 1 day at 4 °C, immersed in a 30% (w/v) sucrose solution in PBS for 2 days at 4 °C, and frozen by vapor of liquid nitrogen, then stored at −80 °C until sectioning. Organs were embedded into Frozen Section Compound (Leica FSC 22 Clear, Leica Microsystems srl, Italy) and 20 µm slices were prepared using cryostat instrument. The sections were then placed on HistoBond® microscope slides (Marienfeld, Germany) and stained with Haematoxylin‐Eosin (Modified Gill's Type II Haematoxylin; Eosin G) or 4’,6‐diamidion‐2‐phenylindole (DAPI) and Luciferase antibody (Primary Antibody, Red Firefly Luciferase Polyclonal Antibody, eBioscience, 1:50; Secondary Antibody, Goat Anti‐Rabbit IgG Cross‐Adsorbed Alexa 594, Invitrogen, 1:1000) for tumor recognition. Slices were imaged using confocal microscopy (Nikon A1).
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2

Immunofluorescence Staining of C2C12 Myotubes

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C2C12 cells were fixed in 4% paraformaldehyde in PBS (Santa Cruz, Dallas, TX, USA) for 15 min and permeabilized with 0.5% Triton-X in PBS for 15 min at room temperature. To avoid non-specific binding, cells were blocked with 5% BSA in PBS for 30 min. Immunolabeling with anti-Myosin Heavy Chain (MHC) primary antibody (clone MF20, Developmental Studies Hybridoma Bank) in 5% BSA was done overnight at 4°C. Secondary anti-mouse antibody coupled to Alexa Fluor 555 (Molecular Probes) was used to detect MHC signal in myotubes. Nuclei were counterstained with Hoechst 33258 (Life Technologies by Thermo Fisher Scientific, Waltham, MA, USA). Images were taken with Olympus fluorescent microscope with 20x magnification.
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3

Histochemical Assessment of PLGA-TGF-β1 NPs

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To perform the histochemical assessment, scaffolds were fixed in 4% formaldehyde solution in PBS (Santa Cruz Biotechnology, Dallas, TX, USA) for 30 min and, washed in PBS 1× twice. Samples were then dehydrated by a graded series of ethyl alcohols (from 50% to 100%), clarified by xylene for 45 min twice and incubated in paraffin overnight at 56 °C to allow paraffin infiltration. After two incubations in paraffin, samples were embedded in paraffin blocks horizontally. Ten-micrometre-thick slices were cut and, after deparaffination and rehydration, Haematoxylin and Eosin and Sirius Red staining were performed. Haematoxylin and Eosin staining was observed by light microscope, while Sirius Red staining by both light and fluorescence microscope. The homogeneity PLGA_TGF-β1 NPs distribution throughout the composite scaffold was investigated by immunohistochemistry on 10-µm-thick paraffin-embedded sections collected at different Z-axis depths. Deparaffination and rehydration with xylene and a graded series of ethyl alcohols (from 100% to 50%), antigen retrieval, primary antibody incubation, antigen visualization, and section mounting were performed as described above. Four images at 10× magnification were captured from each slice and examined for semi-quantitative analysis as disclosed above.
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4

ELISA for Autoantibody Detection

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The antigenic proteins α-enolase and VDAC1 were diluted to final of 1.0 µg/ml. α-enolase and VDAC1 were incubated in 96-well microplates in coating buffer at 4 °C overnight, then free unbound sites were blocked with 1% BSA for 2 h at 37 °C. The plates were incubated with human serum samples diluted at 1:100 with PBS for 1 h at 37 °C, then they were washed and incubated with 100 µl of horseradish peroxidase (HRP)-conjugated goat anti-human IgG diluted at 1:5000 with PBS (Santa Cruz Biotechnology) for 30 min at 37 °C. TMB substrate was added and incubated for 5 min at room temperature, and this reaction was terminated by adding the stop solution. The absorbance was measured by spectrophotometry at a wavelength of 450 nm. The cutoff value designating positive reaction was the mean optical density (OD) of 25 normal children sera plus 3 standard deviations (SD).
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5

Investigating A549 Cell Invasion Dynamics

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A549 cells were plated (1 × 106 cells) on 10-cm cell culture dishes in basal medium (10% FBS in DMEM). After 24 h, the medium was replaced with serum-free DMEM. At the same time, cells were treated with ZM at a concentration of 100 nM, 1 µM or 10 µM in individual plates. After 24, 48, and 72 h, A549 cells were reseeded (6 × 104 cells) in Matrigel and fibronectin (BD Biosciences, San Jose, CA, USA)-coated Falcon cell culture inserts with a basal medium. The invasion assay was carried out for 24 h in a tissue culture incubator. After 24 h, the cells were fixed with 4% formaldehyde dissolved in phosphate-buffered saline (PBS; Santa Cruz Biotechnology, Inc., Dallas, TX, USA). After fixing for 1 min, the chambers were rinsed once in PBS and then stained with hematoxylin and eosin (Merck, Mendota Heights, MN, USA) for 3–5 min. These cells were counted under a microscope with a 4× objective.
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6

Establishing Cell Cultures: Materials and Protocols

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Dulbecco’s Modified Eagle Medium (DMEM) and Fluoroshield histology mounting medium were purchased from Sigma Aldrich (St. Louis, MO, USA); fetal bovine serum (FBS) (Capricorn Scientific), paraformaldehyde (ROTH), glutaraldehyde, 25% solution (Sigma Aldrich, St. Louis, MO, USA), Phalloidin iFluor 647 (Abcam, Cambridge, UK); 4′,6-diamidino-2-phenylindole (DAPI), dimethyl sulfoxide (DMSO), phosphate-buffered saline (PBS), and 2.5% Trypsin-EDTA all were purchased from Santa Cruz Biotechnology (Dallas, TX, USA).
The murine macrophage cell line, RAW264.7 (ATTC TIB-71), was purchased from the American Type Cell Culture Collection (ATCC, Manassas, VA, USA). HeLa cells stably expressing histone H2B-GFP were kindly provided by Prof. P.Tchelidze, who had used them in his previous research [12 (link),13 (link),14 (link),15 (link),16 (link)]. Primary mouse skin fibroblasts (pMSFs) had been previously prepared at our laboratory according to the protocol described in [17 (link)], and the early passages of pMSFs were stored at −86 °C. These cells were thawed and passaged for the current experiments.
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7

IFO Powder Effects on Inflammatory Markers

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IFO powder was sourced from Picasso, China. Daidzein (DZN) in pure powder form was procured from Macklin Company. Phosphate-buffered saline (PBS) was obtained from Santa Cruz Biotechnology, USA. Enzyme-linked immunosorbent assay (ELISA) kits specific to rats, including tumor necrosis factor-alpha (TNF-α), interleukin-6 (IL-6), interleukin-10 (IL-10), inducible nitric oxide synthase (iNOS), and caspase-3 (Casp-3), were purchased from Nanjing Pars Biochem CO. Diethyl ether, used as an anesthetic, was acquired from Erochem Limited.
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8

Measuring SKOV3 Cell Proliferation

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After recovery, SKOV3 cells were washed with phosphate-buffered saline (PBS) (Santa Cruz Biotechnology, Dallas, Texas, USA) and incubated in 4% paraformaldehyde (Santa Cruz Biotechnology, Dallas, Texas, USA) for 15 min. Cancer cells were washed with PBS plus 0.02% Triton X-100 (Sigma-Aldrich, Dorset, UK) 3 times for 5 min each and blocked with 10% donkey serum (Sigma-Aldrich, Dorset, UK) for 30 min. After blocking, cells were incubated with anti-Ki-67 antibody (1:200, rabbit polyclonal) (Santa Cruz Biotechnology, Dallas, Texas, USA) at 4 °C overnight and anti-rabbit antibody (1:1000, goat polyclonal) (Abcam, Cambridge, UK) for 1 h at room temperature under dark in sequence. The 4’,6-diamidino-2-phenylindole (DAPI) mounting media (Vector Laboratories, Burlingame, California, USA) were mounted on cancer cells. The fluorescent images were taken under a fluorescence microscope, and the percentage of Ki-67-positive cells was calculated by Fiji (ImageJ 2.0) software (National Institutes of Health, Bethesda, Maryland, USA).
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9

Extraction of Decellularized Bovine Tendon ECM

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tECM was extracted as described previously [15 (link)]. Briefly, bovine Achilles tendons (2- to 3-month-old calves from Research 87, USA) were harvested, cryosectioned at 10 µm thickness (Cryotome, Thermo Fisher Scientific, USA) and decellularized using 1% Triton X-100 (Sigma-Aldrich, USA) and treatment with DNase (200 U/mL, Worthington, USA), and RNase (50 U/mL, Worthington). The decellularized tissue was extracted using 3 M urea (Sigma-Aldrich) at 4 °C for 3 days and then dialyzed (2 K molecular weight cutoff, Thermo Fisher Scientific) against phosphate-buffered saline (PBS, Santa Cruz Biotechnology, USA) at 4 °C for 2 days. The dialysate was then spin-concentrated using protein centrifugation tubes (3 K molecular weight cutoff, Thermo Fisher Scientific) and stored at − 80 °C for subsequent experimental use. Prior to supplementation in culture medium, the tECM solution was filter-sterilized using a 0.22-μm polyvinylidene fluoride (PVDF) syringe filter unit (Merck Millipore, USA).
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10

Immunofluorescence Analysis of SKOV3 Cells

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After recovery, SKOV3 cells were washed with phosphate-buffered saline (PBS) (Santa Cruz Biotechnology, Dallas, Texas, USA) and incubated in 4% paraformaldehyde (Santa Cruz Biotechnology, Dallas, Texas, USA) for 15 min. Cells were washed with PBS plus 0.02% Triton X-100 (Sigma-Aldrich, Dorset, UK) 3 times for 5 min each and blocked with 10% donkey serum (Sigma-Aldrich, Dorset, UK) for 30 min. After blocking, cells were incubated with primary antibody at 4 °C overnight and secondary antibody for 1 h at room temperature under dark in sequence (Table S1). The DAPI mounting media (Vector Laboratories, Burlingame, California, USA) were mounted on cancer cells. The expressions of proteins were detected by a fluorescence microscope.
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