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15 protocols using plate luminometer

1

Luciferase Reporter Assay for Embryonic Stem Cells

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Luciferase reporter plasmid was derived by subcloning of the D‐loop promoter region into pGL3‐basic luciferase plasmid (Addgene). CMV‐lacZ has been previously described in Lukas et al (1997).
Embryonic stem cells and EpiSCs were plated in a 12‐well plate and transiently transfected with luciferase reporter plasmid with CMV‐lacZ to normalize for transfection efficiency (based on CPRG (Merck) colorimetric assay), together with plasmids encoding for the indicated proteins. We transfected 1.5 μg of DNA in each sample by adding the pKS Bluescript plasmid when needed. Forty‐eight hours after transfection, the cells were harvested in Luc lysis buffer (25 mM Tris pH 7.8, 2.5 mM EDTA, 10% glycerol, 1% NP‐40). Luciferase activity was determined in a Tecan plate luminometer with freshly reconstituted assay reagent (0.5 mM D‐luciferin, 20 mM tricine, 1 mM (MgCO3)4·Mg(OH)2, 2.7 mM MgSO4, 0.1 mM EDTA, 33 mM DTT, 0.27 mM CoA, 0.53 mM ATP).
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2

Luciferase Assay for β-Catenin/TCF Transcription

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Luciferase assays were performed in HEK293 as described in Ref. [30 (link)]. Briefly, cells were transfected with β-catenin/TCF-responsive reporter TOP-FLASH (M50 Super 8x TOPFlash, Addgene, Cat#12456), together with CMV-β-gal [30 (link)] to normalize for transfection efficiency with CPRG (Roche). DNA content was kept uniform by using pBlueScript II SK (Addgene, Cat#212205).
Cells were plated in 24-well plates at a density of 5×104 cells/well. After 24 h luciferase reporter plasmid was transiently transfected using TransIT®-LT1 Transfection Reagent (Mirus). 48 h after transfection, cells were left untreated or treated with the compounds for 8 h and then harvested in Luc lysis buffer (25 mM Tris pH 7.8, 2.5 mM EDTA, 10% glycerol, 1% NP-40, 2 mM DTT). Luciferase activity was determined in a Tecan plate luminometer with freshly reconstituted assay reagent (0.5 mM D-Luciferin, 20 mM tricine, 1 mM (MgCO3)-4 mM Mg(OH)2, 2.7 mM MgSO4, 0.1 mM EDTA, 33 mM DTT, 0.27 mM CoA, 0.53 mM ATP).
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3

Sensitive NADH Detection Assay

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Example 37

Two fold serial dilutions of NADH (Sigma) were made in PBS starting from 10 μM. 25 ul of each dilution was transferred into wells of a 384-well plates. Detection reagent was made by adding 10 U/ml rat diaphorase (Sigma) and 40 μM proluciferin substrate PBI 4312 into Luciferin Detection Reagent (LDR; Promega Cat. No V8920). 25 μl of detection reagent was added to the NADH samples. The reactions were incubated for 30 minutes at room temperature, and luminescence was measured using a Tecan plate luminometer.

The results show that the diaphorase enzyme remains active in the detection reagent, and the NADH-dependent reduction of the proluciferin by diaphorase into luciferin can occur simultaneously with the luciferin-dependent light-generating luciferase reaction (FIG. 29).

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4

Dinucleotide Detection and Quantification

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Example 40

Two fold serial dilutions of NADH, NADPH, NAD, and NADP (Sigma) were made in PBS starting from 0.313 uM. 10 ul of each dilution was transferred into wells of a 384-well plate. Detection reagents were made by adding 10 U/ml of rat diaphorase (Sigma), 40 uM proluciferin substrate PBI 4312 and NADP or NAD dependent enzyme amplification systems consisting of Glucose-6Phosphate Dehydrogenase (5 U/ml) and glucose-6P (0.5 mM) for NADP or Lactate Dehydrogenase (5 U/ml) and Lactate (40 mM) for NAD into Luciferin Detection Reagent (LDR; Promega Cat. No V8920). 10 ul of appropriate detection reagent was added to the dinucleotide samples. The reactions were incubated for 30 minutes at room temperature, and luminescence measured on a Tecan plate luminometer.

The results show that when the detection method described herein is combined with the dinucleotide specific amplification enzyme system, light is generated only in the samples containing appropriate dinucleotide (FIG. 31).

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5

NADP Detection using Pro-luciferin Substrate

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Example 39

Two fold serial dilutions of NADP (Sigma) were made in PBS starting from 0.5 μM. 25 μl of each dilution was transferred into wells of a 384-well plates. Detection reagent was made by adding 10 U/ml rat diaphorase (Sigma), 40 μM proluciferin substrate PBI 4312 and NADP dependent enzyme amplification system consisting of 0.5 U/ml glucose 6 phosphate Dehydrogenase (Sigma) and 500 μM glucose 6 phosphate (Sigma) into Luciferin Detection Reagent (LDR; Promega Cat. No V8920). 25μ of detection reagent was added to the NADP samples. The reaction was incubated for 30 minutes at room temperature, and luminescence measured using a Tecan plate luminometer.

The following example demonstrates the use of the pro-luciferin substrate PBI 4312 to detect and measure NADP Luminescence generated is indicative of the presence of NADP with the light output directly proportional to the amount of NADP present in the sample. The results show that the diaphorase and glucose 6 phosphate Dehydrogenase enzymes remain active in detection reagent, and all three enzymatic reactions can occur simultaneously (FIG. 30B).

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6

Measuring NAD(P)/NAD(P)H Levels in HepG2 Cells

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Example 45

HepG2 cells were plated into wells of a 384-well plate at 5,000 cells/well in 25 ul of RPMI media containing 22 mM glucose or 10 mM galactose as an energy source. The cells were treated with 1 uM mitochondrial toxin antimycin or rotenone. At 4 and 24 hours after drug treatment, 25 μl of appropriate detection reagent was added to the cells. The NADH/NADPH detection reagent contained 10 U/ml rat diaphorase, 32 uM proluciferin substrate PBI 4312, 0.5 U/ml Glucose-6-Phosphate Dehydrogenase and 0.4 mM glucose-6-phosphate into Luciferin Detection Reagent. The NAD/NADH detection reagent contained 10 U/ml of rat diaphorase, 32 uM proluciferin substrate PBI 4312, 10 U/ml Lactate Dehydrogenase and 40 mM Lactate in Luciferin Detection Reagent. The reactions were incubated for 30 minutes at room temperature, and luminescence measured using a Tecan plate luminometer. The data are shown as % of dinucleotides remaining in the cells after treatment compared to untreated cells.

The results show that drug induced changes in cellular NAD(P)/NAD(P)H levels can be measured using the method described herein (FIG. 36).

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7

Cell Quantification via Proluciferin Conversion

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Example 41

Two fold serial dilutions of PC3 cells were made in F12K media with 10% FBS. 25 ul of each dilution was transferred into wells of a 384-well plate. Detection reagent was made by adding 10 U/ml rat diaphorase (Sigma) and 40 μM proluciferin substrate PBI 4312 into Luciferin Detection Reagent (LDR; Promega Cat. No V8920). 25 μl of detection reagent was added directly to the cells. The reactions were incubated for 30 minutes at room temperature, and luminescence measured using a Tecan plate luminometer.

FIG. 32 shows the correlation between cell number and luminescence indicating a direct relationship between luminescence generated via proluciferin conversion and the total amount of reduced dinucleotides NADH/NADPH present in the cells. The results also show that detection system comprised of diaphorase and pro-luciferin PBI 4312 combined with Luciferase Detection Reagent (LDR) can be added directly to the cells to measure the amount of reduced dinucleotides present in the cells.

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8

NAD Detection via Luminescent Assay

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Example 38

Two fold serial dilutions of NAD (Sigma) were made in PBS starting from 0.25 μM. 25 μl of each dilution was transferred into wells of a 384-well plates. Detection reagent was made by adding 10 U/ml rat diaphorase (Sigma), 40 μM proluciferin substrate PBI 4312 and NAD dependent enzyme amplification system consisting of 5 U/ml lactate Dehydrogenase (Calbiochem) and 40 mM lactate (Sigma) into Luciferin Detection Reagent (LDR; Promega Cat. No V8920). 25 μl of the detection reagent was added to the NAD samples. The reactions were incubated for 30 minutes at room temperature, and luminescence measured using a Tecan plate luminometer.

The following example demonstrates the use of the pro-luciferin substrate PBI-4312 to detect and measure NAD Luminescence generated is indicative of the presence of NAD with the light output directly proportional to the amount of NAD present in the sample. The results show that the diaphorase and lactate dehydrogenase enzymes remain active in the detection reagent, and all three enzymatic reactions can occur simultaneously (FIG. 30A)

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9

YAP/TAZ Transcriptional Activity Assay

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Cells were plated in 24-well plates and transfected with YAP/TAZ luciferase reporter 8XGTIIC-lux plasmid (50 ng/cm2) (Addgene 34615) together with CMV-lacZ (75 ng/cm2) to normalize for transfection efficiency based on CPRG (Merck) colorimetric assay. Transfected DNA content was kept equal using pKS Bluescript. Cells were harvested in luc lysis buffer (25 mM Tris pH 7.8, 2.5 mM EDTA, 10% glycerol, 1% NP-40). Luciferase activity was determined in a Tecan plate luminometer with freshly reconstituted assay reagent (0.5 mM D-Luciferin, 20 mM tricine, 1 mM (MgCO3)4Mg(OH)2, 2.7 mM MgSO4, 0.1 mM EDTA, 33 mM DTT, 0.27 mM CoA, 0.53 mM ATP). Each sample was transfected in two biological duplicates; each experiment was repeated independently with consistent results.
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10

Transcriptional Activity Regulation Assay

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D2.0R (parental, EGFP-shCtrl and EGFP-shEphB6 #31 and #35) cells were transfected with Lipofectamine 3000 Transfection Reagent (Invitrogen, L3000001) following the manufacturer’s instructions. TFEB transcriptional reporter plasmid (RAGD promoter cloned upstream of the luciferase gene, a gift from Prof. Graziano Martello, University of Padua) [41 (link)] were transfected together with a plasmid with constitutive expression of Renilla luciferase to normalize transfection efficiency [42 (link)]. After 6 h, 1.8 × 104 transfected cells were plated both on TT1 layer (coculture) and on plastic (monoculture) in 24-well format. 48 h after replating, cells were harvested in Luc lysis buffer (25 mM Tris pH 7.8, 2.5 mM EDTA, 10% glycerol, 1% NP-40) and samples on plastic were diluted 1:5 in Luc lysis buffer to balance the Luciferase/Renilla content compared to coculture. Luciferase and Renilla activity were determined in a Tecan plate luminometer with freshly reconstituted assay reagents (0.5 mM D-Luciferin (Sigma-Aldrich, L9504), 20 mM tricine, 1 mM (MgCO3)4Mg(OH)2, 2.7 mM MgSO4, 0.1 mM EDTA, 33 mM DTT, 0.27 mM CoA, 0.53 mM ATP for Luciferase reaction, and 4 µg/mL coelenterazine (Invitrogen, C2944) in TBS 1X for Renilla reaction) [42 (link)]. Each sample was transfected in at least three biological duplicates in each experiment.
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