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Donkey anti goat 568

Manufactured by Thermo Fisher Scientific
Sourced in United States

Donkey anti-goat 568 is a secondary antibody conjugated with the fluorescent dye Alexa Fluor 568. It is designed to detect and visualize primary antibodies raised in goat, by binding to the IgG portion of those antibodies. This secondary antibody can be used in various immunodetection techniques, such as immunofluorescence, Western blotting, and flow cytometry.

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9 protocols using donkey anti goat 568

1

Fos Immunohistochemistry in Brain Tissue

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Animals were sacrificed 4–6 weeks post-injection and perfused with 4% PFA. The brains were dissected out and fixed in 4% PFA for 2 hours at room temperature, rinsed with 1X PBS, then placed in 15%–30% sucrose overnight at 4°C. Brains were then rinsed in PBS, embedded in OCT, and frozen at −80°C until sectioning.
35 um sections were cut on a Leica CM1950 cryostat. Free-floating sections were washed in PBS 3× 5 minutes, followed by 1 hour blocking in 5% normal donkey serum (NDS). Primary antibody (goat anti-Fos; Santa Cruz Biotechnology sc-52-G, 1:400) was diluted in 0.1% PBS/Triton X-100 and 5% NDS and incubated overnight (>12 hours) at 4°C. Sections were then washed with PBS three times and incubated with secondary antibody (donkey anti-goat 568; Invitrogen 1:500) overnight at 4°C. Sections were then washed with PBS three times and mounted onto Superfrost Plus slides, dried >15 minutes room temperature, and coverslipped in 50% glycerol containing DAPI (1 ug/mL). Images were acquired using a confocal microscope (Zeiss LSM 880).
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2

Immunofluorescence Staining of ECM Proteins

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Anti-α-actinin-4 was from Santa Cruz Biotechnology, Inc (Dallas, TX, USA, Cat #: SC-49333); anti-CD11b was from CedarLane Laboratories Limited (Hornby, Ontario, Canada, Cat #: CL8941AP); anti-Fibronectin was from Sigma (St. Louis, MO, USA, Cat #: F3648); anti-Integrin α8 was from R&D Systems (Minneapolis, MN, USA, Cat #: AF4076); anti-Laminin α1 was a gift from Dr. Dale Abrahamson (KU Medical Center, Kansas City, KS, rat monoclonal 8B3); anti-Laminin α2 and anti-β actin were from Sigma (St. Louis, MO, USA, Cat #: L0663); anti-Laminin α5 was a gift from Dr. Jeff Miner (Washington University, St. Louis, MO); anti-p-FAK397 was from Assay Biotechnology (Sunnyvale, CA, USA, Cat #: A0925) and from Invitrogen (Carlslab, CA); anti-Total FAK was from Cell Signaling Technology (Danvers, MA, USA, Cat #: 3285). Anti-MMP-10 antibodies were from Millipore (Billerica, MA, USA, Cat # ABT 289). All Alexa-fluor conjugated secondary antibodies were from Invitrogen (Carlsbad, CA), including donkey anti-rat 488, donkey anti-rabbit 555, goat anti-rat 488, goat anti-rabbit 555, donkey anti-rabbit 488, and donkey anti-goat 568. The small molecular inhibitor for FAK activation, TAE226 was from Chem Scene (Monmouth Junction, NJ, Cat #CS-0594); the peptide inhibitor for NF-kappaB (SN-50) was from Calbiochem (now EMD Millipore, Billerica, MA, Cat #481480)
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3

Immunofluorescence Antibody Optimization

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The Histone H3-S10P mouse monoclonal antibody (clone 6G3) was purchased from Cell Signaling Technology, Inc. (Danvers, MA, USA), whereas the H3-S28P rat monoclonal (clone HTA28) and the H4-R3me2 rabbit polyclonal antibody (catalog #39275) were obtained from Thermo Fisher Scientific (Rockford, IL, USA) and Active Motif (Carlsbad, CA, USA), respectively. The Histone H3-K4me3 rabbit monoclonal antibody (clone MC315) was purchased from Millipore, while the Histone H4-K16acetyl goat polyclonal antibody (catalog #sc-8662) was obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). The Msk2 rabbit polyclonal (catalog # ab42282), Lamin-B1 rabbit polyclonal (catalog #ab16048) and Gapdh rabbit polyclonal (catalog #ab9485) antibodies were obtained from Abcam (Cambridge, MA, USA).
The Alexa Fluor donkey anti-mouse 405 antibody (custom synthesis), donkey anti-rat 488, donkey anti-sheep 488, donkey anti-goat 568 and donkey anti-rabbit 647 antibodies were purchased from Invitrogen (Carlsbad, CA, USA) for confocal imaging analysis. As controls, the mouse, rat, rabbit and goat IgG isotype antibodies were obtained from Vector Laboratories (Burlingame, CA, USA).
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4

Immunohistochemistry of PPAR Isotypes

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Primary antibodies: rabbit anti-PPARα, Abcam (Cambridge, MA), 1:50; rabbit anti-PPARβ/δ, Pierce (Rockford, IL), 1:100; rabbit anti-PPARγ, Abcam, 1:20; mouse anti- neuronal nuclei-neuron specific nuclear protein (NeuN), Millipore (Billerica, MA), 1:500; mouse anti-glial fibrillary protein (GFAP), NeuroMab, 1:300; goat anti-ionized calcium-binding adapter 1 (Iba1), Abcam, 1:300. Secondary antibodies: goat anti-rabbit 488, donkey anti-rabbit 488, goat anti-mouse 594 or donkey anti-goat 568, Invitrogen (Grand Island, NY), 1:1,000. For complete list of antibodies see Supplemental Table S2.
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5

Multicolor Immunofluorescence Labeling

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anti-CD31 (1:100, R&D #AF3628); anti-CDH5 (1:100, R&D #AF1002); anti-GFP (1:500, Aves #GFP-1020). Donkey anti-Goat 568 (1:200, Thermo Fisher #A-11057); Donkey anti-Chicken 647(1:200, Jackson Immunoresearch (#703-605-155); Donkey anti-Chicken 488 (1:200, Jackson Immunoresearch #703-545-155). All primary antibodies were validated with controls before usage.
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6

Immunocytochemical Analysis of TE-RMSs

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Following TE-RMS formation, constructs were extracted from micro-columns onto poly-l-lysine glass slides for immunocytochemical analyses as previously described [29 (link)]. Planar astrocyte cultures and extracted TE-RMSs were fixed with 4% paraformaldehyde for 30 min at room temperature. Following rinsing with PBS, cultures and constructs were permeabilized with 0.3% Triton X-100 and blocked with 4% normal horse serum for one hour at room temperature and again rinsed with PBS. Cultures and constructs were incubated in the primary antibody goat anti-glial fibrillary acidic protein (GFAP) (1:1000) (Abcam Cat # ab53554, RRID: AB_880202) overnight at 4 °C. Cultures were then rinsed and incubated in the Alexa secondary antibody donkey anti-goat 568 (1:500) (Thermo Fisher Scientific Catalog #: A-11057, RRID: AB_2534104) and Hoechst solution (1:1000) (Invitrogen H3570) in the dark for two hours at 37 °C.
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7

Immunofluorescence Staining Protocol

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Excess antibodies were removed by washing sections 4x5min with PBST before secondary antibodies incubation in the blocking buffer for 2 h at RT. Secondary antibodies used were Donkey anti-Chicken 488 (Sigma-Aldrich, #SAB4600031-250UL, 1:400), Donkey anti-Rabbit 568 (ThermoFisher, #A-10042, 1:400), Donkey anti-Goat 568(ThermoFisher, #A11057, 1:400), Donkey anti-Goat 633 (ThermoFisher, A-21082, 1:400), Donkey anti-Rabbit 647 (ThermoFisher, #A-31573, 1:400), Donkey anti-Mouse 647 (ThermoFisher, #A-31571, 1:400). Sections were then counterstained with DAPI in PBST, washed 4x5min in PBST and mounted with ProLong Gold Antifade Mountant with DAPI (Invitrogen, #P36935) under coverslips, airdried, and stored at 4°C. Fluorescent images were captured using a Zeiss LSM 700 confocal microscope.
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8

Tumor Angiogenesis Immunofluorescence Analysis

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Tumor pieces were fixed with 4% PFA, embedded in paraffin and cut into 3 µm sections. Tumor sections were immersed in a 10% blocking solution of the specific serum and then incubated (overnight, 4°C) in solutions containing the following primary antibodies: goat anti-mouse CD105 (R&D Systems, ref. AF1320), mouse anti-human vimentin (Santa Cruz Biotechnology, ref. sc-6260) and rabbit anti-VEGF (Abcam, ref. ab52917). Then, Alexa Fluor-conjugated secondary antibodies were used for 1 h (donkey anti-goat 568 and goat anti-mouse 660, LifeTechnologies, ref. A-11057 and A-21055, respectively; and donkey anti-rabbit 647, Abcam ref. ab150075), and the nuclei were counterstained with DAPI. Coverslips were mounted using Fluor-Save™ reagent (Calcibiochem, ref. 345789). Five random areas of each tumor were imaged using a Leica Microsystems THUNDER 3D Assay Imager epifluorescence microscope. Immunofluorescence images were quantified with the open-source software FiJi version 2.3.051. The background was subtracted from CD105 and VEGFA raw intensity images, then the integrated intensity density of each image was multiplied by the number of pixels in the image and divided by the number of cells that were stained by DAPI.
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9

Vascular Integrity of Brain Tumors

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Immunofluorescence staining for mouse albumin was performed to determine the vascular integrity of the brain. Brain sections obtained from GBM27 and GBM38 hCSCs and PBS control xenotransplants were incubated with a 5% blocking solution of the specific serum, and then incubated (overnight, 4°C) in solutions containing the following primary antibodies: goat anti-mouse CD105 (R&D Systems), goat anti-mouse albumin (Santa Cruz Biotechnology), and mouse anti-human vimentin (Santa Cruz Biotechnology). Then, Alexa Fluor-conjugated secondary antibodies were used for 1 h (donkey anti-goat 568, rabbit anti-goat 488, and goat anti-mouse 660; Life Technologies, USA), and then nuclei were counterstained with DAPI and coverslips were mounted using FluorSave™ reagent (Millipore). Fluorescence was examined under a Leica TCS SP5 inverted confocal microscope.
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