The largest database of trusted experimental protocols

8 protocols using phospho bcl 2

1

Western Blot Analysis of Apoptosis Regulators

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell pellets were lysed in RIPA buffer (Macgene Technology Ltd.) with 10 μl/ml protease inhibitor cocktail (P8340, Sigma) and 10 μl/ml phosphatase inhibitor cocktail (p0044, Sigma). The proteins in cell lysates were separated by electrophoresis on a 15% SDS–polyacrylamide gel, transferred to nitrocellulose membranes, immunostained, and visualized by enhanced chemiluminescence detection reagents (Applygen Technologies Inc., Beijing, China). Antibodies against Survivin, Bcl-2, Bcl-xL, P-Histone 3, phospho-Survivin, and phospho-Bcl-2 were purchased from Cell Signaling (Danvers, MA), and the antibody specific for phospho-Ser-62-Bcl-xL was purchased from Abcam (Cambridge, UK). The β-Actin antibody was purchased from Zsbio (Beijing, China).
+ Open protocol
+ Expand
2

Ginsenoside-Mediated Cytoprotective Mechanisms

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ginsenosides (Rb1, Rc, Rg2, and Rg3), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenylte-trazolium bromide (MTT; cat. M5655), z-VAD-FMK (cat. V116), bafilomycin A1 (cat. B1793), N-acetyl-l-cysteine (NAC; cat. A9165), and propidium iodide (PI; cat. P4170) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Primary antibodies against Atg5 (cat. sc-515347), Bcl-2 (cat. sc-7382), caspase-9 (cat. sc-133109), caspase-3 (cat. sc-7148), poly (ADP-ribose) polymerase 1 (PARP1; cat. sc-8007), and actin (cat. sc-376421) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The LC3 (cat. 2775), Beclin-1 (cat. 3738), and phospho-Bcl-2 (cat. 2827) antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). Dihydrorhodamine (DHR) 123 (cat. D23806) and acridine orange (cat. A3568) were obtained from Molecular Probes (Eugene, OR, USA) and Invitrogen (Carlsbad, CA, USA), respectively.
+ Open protocol
+ Expand
3

Compound Treatment Induces Apoptosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were seeded in T-25 flasks at ∼2.5 × 105 cells per flasks in 4 ml of cell-specific media and exposed to compounds at 0.5 μM for 24 h, 48 h or 72 h. Protein was prepared from treated cells using RIPA lysis buffer (Sigma) and quantified using the Bradford protein assay with Bradford reagent (Sigma). Equal amounts of protein were loaded in all wells (15 μg). Proteins were separated by electrophoresis through a 4–12% NuPAGE Bis-Tris gel (Invitrogen) and subsequently transferred to Hybond-P membrane (GE Healthcare, Buckinghamshire, UK).
Detection was carried out using anti-human cyclin B1 (ref. H433; Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), phospho-Bcl2 (ref. 2827S; Cell Signaling Technology, Boston, MA, USA), caspase-3 (ref. 9665; Cell Signaling), GAPDH (ref. 2118; Cell Signaling) and p53 (ref. ab28-100; Abcam, Cambridge, UK) primary antibodies. Secondary alkaline phosphatase-conjugated anti-rabbit IgG (ref. 7054; Cell Signaling) or anti-mouse IgG (ref 7056; Cell Signaling) antibodies were used for detection in conjunction with a chemifluorescent substrate (ECF substrate, ref. RPN5785; GE Healthcare). Bands were visualised and quantified using a Storm imaging system (GE Healthcare).
+ Open protocol
+ Expand
4

B-Cell Lymphoma Protocol: Cellular Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pfeiffer cell line derived from human diffuse large B cell lymphoma cells were purchased from ATCC, USA. B95–8 lymphoma cells and EBV-infected marmoset white cells are a gift from Prof. Yao (The First Affiliated Hospital of Medical School of Zhejiang University). Mouse monoclonal antibody (3E8) against human B7-H4 is a gift from Institute of Infectious Diseases affiliated Zhejiang University. Goat anti-rabbit IgG antibodies and horseradish peroxidase (HRP)-conjugated goat anti-mouse IgM were purchased from Santa Cruz Biotechnology (Santa Cruz, Calif., USA). Rabbit antibodies against Bcl-2, phospho-Bcl-2, Bax, caspase 3, cleaved caspase 3, caspase 9, cleaved caspase 9, NF-κB p65, phosphor-NF-κB p65, extracellular-regulated kinase 1/2(Erk1/2), phospho-Erk1/2, Akt, phosphor-Akt and HRP-conjugated rabbit anti-D-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) monoclonal antibody were purchased from Cell Signaling Technology (Danvers, Mass., USA).
+ Open protocol
+ Expand
5

Delineating Apoptotic Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
PR-619 was obtained from MedChemExpress (Junction, NJ, USA) and cisplatin from Merck Millipore (Billerica, MA, USA). All other chemicals were purchased from Sigma-Aldrich (St. Louis, MO, USA) or Merck Millipore. For Western blot analysis, antibodies against cleaved caspase-3 (#9661), cleaved caspase-8 (#9496), B cell lymphoma (Bcl)-2 (#15071), phospho-Bcl-2 (#2824), phospho-p53 (#9284), caspase-4 (#4450), phospho-Janus kinase (JNK) (#9255), and c-Myc (#18683) were procured from Cell Signaling Technology (Danvers, MA, USA). The antibodies against β-actin (#109) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH, #100118) were supplied by GeneTex (Irvine, CA, USA); those against α-tubulin (sc-5286), P21 (sc-6264), P27 (sc-1641), and JNK (sc-571) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). For IHC, the USP14 antibody (#MA5-32821) was purchased from Invitrogen, the USP21 antibody (#17856-1-AP) was purchased from Proteintech (Chicago, IL, USA), and the c-Myc (#ab32072) antibody was purchased from Abcam (Cambridge, UK).
+ Open protocol
+ Expand
6

Western Blot Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysates were separated with SDS-PAGE as described previously.28 Proteins were detected using specific primary antibodies against p38 MAPK (#9212), phospho-p38 MAPK (Thr180/Tyr182; #9215), MK2 (#3042), Hsp27 (#2402), phospho-Hsp27 (Ser82; #2401), Cdk1 (#9116), phospho-Cdk1 (Tyr15; #9111), phospho-Histone H3 (Ser28; #9713), cyclin B1 (#4135), Cdc25c (#4688), phospho-Cdc25c (Ser216; #4901), PARP (#95425), Bcl-2 (#2870), phospho-Bcl-2 (Ser70; #2870), Bcl-XL (#2764), and Mcl-1 (#5453, all from Cell Signaling Technology, Danvers, MA, USA). Antibodies against phospho-MK2 (Thr334; #ab51018) and β-tubulin (#ab11308) were from Abcam (Cambridge, UK). Antibodies against β-actin (#A5316) and GAPDH (#737179) were from Sigma-Aldrich and Santa Cruz Biotechnology, respectively. Secondary antibodies were from Cell Signaling Technology. Detection was performed using the Immobilion Western HRP Substrate Luminol-Peroxidase reagent (MerckMillipore, Billerica, MA, USA) and the ChemiDoc MP System (Bio-Rad, Hercules, CA, USA). Band intensities were quantified by Image-Lab (Bio-Rad).
+ Open protocol
+ Expand
7

Antibody Validation for Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
The antibodies against β-actin (#4967), FLAG-tag (#2044), PARP (#9532), total JNK (#9252), phospho-JNK (#9251), total c-Jun (#9165), phospho-c-Jun (#9261), Total MKK4 (#9152), phospho-MKK4 (#9151), Total MKK7 (#4172), phospho-MKK7 (#4171), total Akt (#4691), phospho-Akt (#4060), total Bcl2 (#2876), and phospho-Bcl2 (#2827), were purchased from Cell Signaling Technology. The anti-serum against IBV S protein and N protein were from rabbits immunized with bacterial expressed fusion proteins as previously described48 (link), 49 (link).
+ Open protocol
+ Expand
8

Immunoblotting and Ubiquitination Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
As described previously, cells were lysed, sonicated and protein concentration was quantified by BCA analysis (Thermo Scientific, Rockford, IL). 50μg of protein lysate was resolved on SDS-PAGE, transferred to PVDF membrane, and blotted with specific primary and secondary antibodies (Sigma-Aldrich) accordingly. [15 (link)] For IP-Western, 500μg of protein lysate was incubated with Ubiquilin 1 tandem UBA (TUBE2) agarose (Boston Biochem, Cambridge, MA) in the IP buffer (25mM Tris•HCl, pH7.4, 150mM NaCl and 1% NP-40) on a rotation platform at 4ºC overnight. Ubiquitinated proteins were bound to the agarose, washed three times with IP buffer and subjected to immunoblotting. [55 (link), 56 (link)] Primary antibodies were used for Mcl-1, CDK9, actin (Santa Cruz Biotechnology, Dallas, TX), phospho-Pol II CTD at Ser2 and Ser5, Pol II CTD (Covance, Princeton, NJ), phospho-ERK1/2, ERK1/2, phospho-CDK9, phospho-Bcl-2, Bcl-xL (Cell Signaling Technology, Danvers, MA), Bcl-2 (Dako, Carpinteria, CA) and GAPDH (EMD Millipore, Billerica, MA). Densitometry of immunoreactive bands on immunoblots was measured with FluorChem E System (ProteinSimple, Santa Clara, CA), quantified and normalized with AlphaView (ProteinSimple).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!