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8 protocols using nonspecific staining blocking reagent

1

Multicolor Immunohistochemistry of Tumor Samples

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Tumor specimens in paraffin‐embedded blocks were cut into 4‐µm‐thick sections. Nonspecific binding was blocked using nonspecific staining blocking reagent (Dako). The sections were incubated with rabbit monoclonal anti‐CD103 antibody (clone: EPR4166 (2); 1/1000; Abcam), mouse monoclonal anti‐CD8 antibody (clone: C8/144; 1/250; Dako), mouse anti‐CD20 antibody (clone: L26, prediluted; Dako, Agilent Technologies, Inc) and mouse anti‐CD11c antibody (cat. no. ab215858; 1/100; Abcam) at 4°C overnight. The sections were subsequently incubated with Alexa Fluor 488‐labeled goat polyclonal anti‐mouse IgG antibody (cat. no. ab150113; 1/1000; Abcam) and Alexa Fluor 647‐labeled goat polyclonal anti‐rabbit IgG antibody (cat. no. ab150079; 1/1000; Abcam) for 1 h at room temperature. The sections were covered with glass using ProLong™ Gold antifade reagent with DAPI (cat. no. P36935; Invitrogen/Thermo Fisher Scientific). Digital images were taken with an all‐in‐one fluorescence microscope (BZ‐8000; Keyence).
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2

Immunohistochemical Analysis of Tumor Immune Cells

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Tumor specimens in paraffin‐embedded blocks were cut into 4‐µm‐thick sections. Nonspecific binding was blocked using nonspecific staining blocking reagent (Dako, Agilent Technologies, Inc). The sections were then reacted with rabbit monoclonal anti‐CD103 antibody (clone: EPR4166 (2); 1/1000; Abcam), mouse anti‐CD8 antibody (clone: C8/144; 1/250; Dako), mouse anti‐CD20 antibody (clone: L26; prediluted; Dako, Agilent Technologies, Inc), or rabbit anti‐CD4 antibody (clone: EPR6855; 1/250; Abcam) at 4°C overnight. Sections were incubated with secondary antibody for 10 min at room temperature. After washing in phosphate‐buffered saline, the sections were visualized using 3‐3′‐diamino‐benzidine for 5 min and counterstained with hematoxylin.
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3

Multiplexed Immune Profiling of Metastatic Lymph Nodes

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Human specimens of metastatic LNs in paraffin‐embedded blocks were cut into 4‐μm‐thick sections. After heat‐mediated antigen retrieval and immunohistochemical analysis, nonspecific binding was blocked using nonspecific staining blocking reagent (Dako). The sections were incubated with rabbit monoclonal anti‐CD103 antibody (clone: EPR4166(2); 1/1000: Abcam), mouse monoclonal anti‐CD8 antibody (clone: C8/144B; 1/250: Dako), mouse monoclonal anti‐granzyme B antibody (cat. no. sc‐8022; 1/100; Santa Cruz Biotechnology), and mouse monoclonal anti‐CD11c antibody (cat. no. ab215858; 1/100; Abcam) at 4°C overnight. The sections were subsequently incubated with Alexa Fluor 488‐labeled goat polyclonal anti‐rabbit IgG antibody (cat. no. ab150113; 1/1000: Abcam) and Alexa Fluor 647‐labeled goat polyclonal anti‐rabbit IgG antibody (cat. no. ab150079; 1/1000: Abcam) for 1 h at room temperature. Prolong Gold antifade reagent with DAPI (cat. no. P36935; Invitrogen/Thermo Fisher Scientific) was then added to the sections and covered with glass coverslips. Digital images were taken using an all‐in‐one fluorescence microscope (BZ‐8000: Keyence).
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4

Immunohistochemical Analysis of Mandibular Cartilage

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To elucidate the expression of ACAN (1:200; ab36861, Abcam, Cambridge, United Kingdom), MMP‐9 (1:1000; ab38898, Abcam), MMP‐13 (1:1000; ab39012, Abcam), interleukin (IL)‐1β (1 /ml; ab9722, Abcam), and cleaved caspase‐3 (1:100; 9509S, Cell Signaling Technology, Danvers, MA), and apoptosis marker in the mandibular condylar cartilage, immunohistochemical staining was carried out using several primary antibodies (Immuno Biological Laboratories, Fujioka, Japan). After deparaffinization and blocking, the sections were incubated overnight with primary antibodies diluted in phosphate‐buffered saline/0.1% bovine serum albumin 4°C in a humid atmosphere. Immunostaining was performed using a Histofine simple stain kit (Nichirei, Tokyo, Japan). Briefly, after blocking of endogenous peroxidase activity with 0.3% hydrogen peroxide in methanol, non‐specific binding of the antibody was blocked by incubating the section for 30 min with non‐specific staining blocking reagent (Dako, Carpinteria, CA). After washing with PBS, the sections were incubated with the corresponding secondary antibodies for 1 hr at room temperature. Finally, immunoactivity was detected using diaminobenzidine, followed by counter‐staining with Mayer's hematoxylin. The sections were observed under a BioRevoBZ‐9000 microscope (KEYENCE, Osaka, Japan).
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5

Immunohistochemical Analysis of CD15 and CXCR2

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Sections with a thickness of 4 μm were obtained from the paraffin-embedded blocks. After incubation at 60 °C for 10 min, the sections were deparaffinized using xylene and rehydrated using a graded series of ethanol. The slides were subsequently washed twice for 5 min in phosphate-buffered saline (PBS). Endogenous peroxidase activity was blocked for 15 min using absolute methanol containing 3% hydrogen peroxide. After washing the sections in PBS, they were microwaved for 10 min to achieve antigen retrieval. Non-specific binding was blocked using a non-specific staining blocking reagent (Dako, Kyoto, Japan). The sections were then incubated overnight at 4 °C with mouse monoclonal antibodies (CD15 or C-X-C motif chemokine receptor 2 (CXCR2), 1:100 dilution; Abcam, Tokyo, Japan), and subsequently washed using PBS for 10 min before a 10-min incubation with a secondary antibody at room temperature. After washing the sections using PBS, they were visualized using 3-3′-diaminobenzidine for 5 min and then counter-stained using haematoxylin before mounting.
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6

Evaluating Cartilage Degeneration Markers

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To investigate the expression of aggrecan, type II collagen (Col2a1), matrix metalloproteinase (MMP)-9, and MMP13 in the condylar cartilage, immunohistochemical staining was performed using various primary antibodies (Immuno Biological Laboratories, Fujioka, Japan). After the sections were deparaffinized and blocked in, they were incubated overnight at 4°C in a humid atmosphere with various primary antibodies diluted in phosphate-buffered saline /0.1% bovine serum albumin. Immunostaining was performed using a Histofine simple stain kit (Nichirei, Tokyo, Japan). Briefly, after blocking endogenous peroxidase activity with 0.3% hydrogen peroxide in methanol, nonspecific binding of the antibody was blocked by incubating the section for 30 min with Non-Specific Staining Blocking Reagent (Dako, Carpinteria, Calif., USA). After washing, the sections were incubated with the corresponding secondary antibodies for 1 h at room temperature, followed by mounted. The sections were examined under a BioRevoBZ-9000 microscope (KEYENCE, Osaka). Negative controls were stained with nonimmune immunoglobulin G.
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7

Immunohistochemical Analysis of LAMP-3 and CD8

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Tumor specimens in paraffin-embedded blocks were cut into 4-µm-thick sections.
Nonspecific binding was blocked using nonspecific staining blocking reagent (DAKO, Kyoto, Japan). The slides were incubated with a mouse monoclonal anti-LAMP-3 antibody (clone: 16H11.2 Merck, Darmstadt, Germany) and a rabbit monoclonal anti-CD8 antibody (clone: EP1150Y; Abcam, Cambridge, UK) at 4°C overnight. The slides were subsequently incubated with HiLyte Fluor 488-labeled goat polyclonal anti-mouse IgG antibody (AnaSpec, Fremont, CA, USA) and HiLyte Fluor 647-labeled goat polyclonal anti-rabbit IgG antibody (AnaSpec, Fremont, CA, USA) for 1 hour at room temperature. The sections were covered with glass using DAPI-Fluoromount-G (Southern Biotech). Digital images were taken with an all-in-one fluorescence microscope (BZ-8000; Keyence, Osaka, Japan).
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8

Immunohistochemical Analysis of Tumor Markers

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Tumor specimens in paraffin-embedded blocks were cut into 4-µm-thick sections.
Nonspecific binding was blocked using nonspecific staining blocking reagent (DAKO, Kyoto, Japan). The sections were then reacted with mouse monoclonal anti-LAMP-3 antibody (clone: 16H11.2 Merck, Darmstadt, Germany), rabbit monoclonal anti-CD8 antibody (clone: EP1150Y; Abcam, Cambridge, UK) and mouse monoclonal anti-S100 antibody (clone: 4C4.9; Abcam, Cambridge, UK) at 4°C overnight. Sections were incubated with secondary antibody for 10 min at room temperature. After washing in phosphate-buffered saline (PBS), the sections were visualized using 3-3'-diaminobenzidine (DAB) for 5 min and counterstained with hematoxylin. We examined the average number of LAMP-3-positive, CD8-positive cells and S100-positive cells in 5 different randomly selected field fields under a light microscope at ×400 magnification.
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