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5 protocols using fla st ultrapure

1

Flagellin and Kinase Inhibitor Combination

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FLA-ST Ultrapure (purified flagellin from Salmonella Typhimurium, a TLR5 agonist) and the vehicle solution, endotoxin-free water, were purchased from InvivoGen (San Diego, CA, USA). In this experiment, it was applied at 0.1 μg, 0.3 μg and 0.9 μg in 10 μL vehicle solution separately, which was modified from the previous procedure of intraplantar administration with flagellin [19 (link)].
Go 6976 was purchased from Tocris Bioscience (Ellisville, MO, USA) and prepared in 0.1% DMSO in 0.1 M PB [57 (link)]. FLA-ST Ultrapure 0.9 μg (InvivoGen, San Diego, CA, USA) was used to combine with Go 6976, which separated into four subgroups (0 μM, 5 μM, 20 μM and 50 μM; n = 3 per subgroup) respectively. Likewise, DAMGO 25 μg (Tocris Bioscience, Ellisville, MO, USA) was used to combine with Go 6976 and also assigned into four subgroups separately.
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2

Purified Flagellin and Loxoribine Treatment

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Purified recombinant flagellin from Salmonella Typhimurium (FLA-ST Ultrapure) and loxoribine were purchased from InvivoGen (San Diego, CA, USA). Lipopolysaccharide (LPS) was purchased from Enzo Life Sciences (Lörrach, Germany). LY294002 was obtained from Cell Signaling Technology (Danvers, MA, USA), while wortmannin and rapamycin were purchased from Sigma-Aldrich (St. Louis, MO, USA). Akt inhibitor IV was obtained from Calbiochem (San Diego, CA, USA). LY294002, wortmannin, and rapamycin were solved in dimethyl sulfoxide (DMSO; Sigma-Aldrich, St. Louis, MO, USA). In all experiments using the inhibitors, DMSO-containing DMEM medium complete (see below; DMSO dilution at 1:1000 vol/vol) served as negative control. Anti-mTLR5 neutralizing IgG antibody was obtained from InvivoGen.
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3

Investigating TLR3 and TLR5 in Blastocysts

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To study the activity of TLR3 and TLR5 in D-5 human embryos, their specific ligands poly (I: C) (InvivoGen, San Diego, CA, USA) and flagellin (FLA-ST Ultrapure, from Salmonellatyphimurium, InvivoGen, San Diego, CA, USA), were added to embryo culture media. Fifteen human embryos at pronucleate (PN) or early cleavage (2–4-cell; EC) stage were thawed on two different occasions and cultured in G1 media (Vitrolife, Gothenburg, Sweden) to D-3 and G2 media (Vitrolife, Gothenburg, Sweden) to D-5. D-5 blastocysts were then treated with 0.5 or 1 μg/ml poly (I: C), 50 or 100 ng/ml flagellin, or G2 medium alone (control) for 24 h. Poly (I: C) and flagellin concentrations used were taken from the literature (Le Tortorec et al., 2008 (link); Aboussahoud et al., 2010 (link)), as well as the manufacturers’ instructions, taking into consideration that poly (I: C) is a potent TLR3 activator. D-6 blastocysts were lysed for PolyAPCR (see below), while the 24 h supernatants were collected, centrifuged at 10,000g for 5 min at 4°C, transferred to fresh tubes and stored at −80°C.
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4

Cultivation and Stimulation of WT IMM Cells

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WT IMM were originally generated in the Katherine A. Fitzgerald lab and grown in DMEM media (4.5 g/liter glucose) supplemented with 10% FBS, 1% antibiotics, and 20 mM HEPES. A total of 30,000 cells/well were seeded in triplicate in 96-well plates for 18–24 h in complete medium and incubated at 37°C with 5% CO2. Cells were then stimulated for 6 h with either 1% vol/vol O. valericigenes CFS or PYG media as control, TLR2 agonist (HKLM at 10E+8 cells/ml; InvivoGen), or TLR5 agonist (FLA-ST Ultrapure 1 µg/ml; InvivoGen). Cells were then collected in RLT lysis buffer by scraping before being stored at −80°C until RNA extraction.
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5

Inducing Intestinal Inflammation in Mice

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To induce intestinal inflammation, mice were injected intravenously with purified flagellin from Salmonella typhimurium (FLA-ST Ultrapure, 5 μg; Invivogen) 5 h before analysis. For microbiota depletion, mice were orally treated for 2 weeks with a combination of antibiotics, administered in their drinking water, including ampicillin (1 mg ml−1), streptomycin (5 mg ml−1), colistin (1 mg ml−1) and sucrose (25 mg l−1), all from Sigma-Aldrich. For chemokine neutralization, mice were injected intravenously during imaging with a mixture of Hoechst 33342 (see above) to control intravenous injection and the following monoclonal blocking antibodies (50 µg): anti-CXCL12 (catalog no. MAB310); anti-CXCL16 (catalog no. MAB503); anti-CCL21 (catalog no. MAB4572) and anti-CCL25 (catalog no. MAB481), all from R&D Systems. Control mice were injected intravenously in accordance with the following isotype controls (50 µg): mouse IgG1 (catalog no. MAB002); rat IgG2a (catalog no. MAB006); and rat IgG2b (catalog no. MAB0061), all from R&D Systems.
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