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7 protocols using rhtgf β1

1

Generating Antigen-Specific Tissue-Resident Memory CD8+ T Cells

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Healthy donor PBMCs were collected via leukapheresis and stored in liquid nitrogen until use. CD8+ T cells were enriched from PBMCs using STEMCELL Technologies EasySep kits. Cells were then stained with fluorochrome-conjugated antibodies against CD8 (SK1), CD45RA (HI100), and CCR7 (G043H7) (all BioLegend, clones in parentheses). Naive CD8+CD45RA+CCR7+ T cells were sorted using a FACSAria IIIu or Fusion cell sorter (BD Biosciences). Sorted naive CD8+ T cells were resuspended in T cell culture media (RPMI, 10% FBS, l-glutamine, penicillin-streptomycin) with 10 IU/mL rhIL-2 (Prometheus) and equilibrated overnight to 2% O2 in a hypoxic chamber (Coy Laboratory Products) or in a standard cell culture incubator (~20% O2, Thermo Fisher Scientific). Cells were then activated with anti-CD3/anti-CD28 beads (Gibco, Thermo Fisher Scientific) at 3 cells per bead for 4 days. On day 4, 1.25 ng/mL rhTGF-β1 (BioLegend) was added, and cells were cultured for an additional 2 days. For phenotype stability assays i-TRM were generated as described, sorted, and resuspended in media pre-equilibrated to 20% O2 or 2% O2 with 20 IU/mL rhIL-2 (Prometheus) or 10 ng/mL rhIL-15 (R&D Systems, Bio-Techne), with or without 1.25 ng/mL rhTGF-β1 (BioLegend).
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2

Luciferase Assay for TGF-β1 Signaling

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After transfection with 1.0 µg SBE-pNL1.2 per 100,000 cells, cells were detached by trypsinization and seeded in white polystyrene 96-well plates at a density of 3 × 104 cells/cm2 for the SW1353 and 8 × 104 cells/cm2 for the G6 and H11 chondrocytes. Cells were serum-starved overnight, 1 h pre-incubated with DMEM/F12 (control), rhIL-1β (R&D Systems, Minneapolis, MN, USA) or OAS-cm and then stimulated with rhTGF-β1 (Biolegend, San Diego, CA, USA) for 5 h. Cells were lysed 5 h post-stimulation using 30 µL ultra-pure water. An equal amount of Nano-Glo luciferase reagent (Promega, Madison, WI, USA) was added and luminescence was determined at 470–480 nm (Clariostar, BMG Labtech, Ortenberg, Germany). Each condition was performed in quadruple and the mean per experiment was depicted.
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T-cell Proliferation and Differentiation Protocols

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For T-cell proliferation: Cd4 T cells were isolated from spleen and lymph nodes of 6–10 week old mice using negative selection (StemCell Technologies, Cambridge, MA). CellTrace Violet (CTV)-labeled T cells were co-cultured with αCd3/Cd28 coated dynabeads (Life Technologies Corp., Grand Island, NY) at 1:1 ratio according to the manufacturer’s protocol in a U bottom 96 well plate. For T cell differentiation: Naive Cd4 T cells were differentiated on activating polystyrene surface (Corning Inc., Corning, NY) with plate-bound αCd3 (2.5 µg/ml) and αCd28 (2.5 µg/ml) in the presence of cytokines for 6 days (Yosef et al., 2013 (link)). For Th1 differentiation: 25 ng/mL rmIL-12 (BioLegend, San Diego, CA), 10 µg/mL αmouse IL4 (Biolegend). For Th17 differentiation: 2.5 ng/mL rhTGF-β1 (Tonbo Biosciences, San Diego, CA), 50 ng/mL rmIL-6 (Tonbo Biosciences), 25 ng/ml rmIL-23 (BioLegend), and 25 ng/ml rmIL-β1 (BioLegend). For iTreg differentiation: 10 ng/mL rhTGF-β1, 100 units/mL of rmIL-2 (BioLegend), 5 µM Retinoic Acid (Sigma, St. Louis, MO).
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4

Culturing and Maintaining Cell Lines

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The MC38 and CT26 cell lines were obtained from the Einstein Cytogenetics Facility cell line repository. The SKBR-3, MDA MB-468, OVCAR-3, OVCAR-4, and NCI HC322M cell lines were derived from the National Cancer Institute Developmental Therapeutics Program cell line repository. The Hepa1-6 cell line was obtained from the Marion Bessin Liver Center at the Albert Einstein College of Medicine. MC38-derived cell lines were cultured in RPMI (Corning) supplemented with 10% FBS. Hepa1-6 and CT26-derived cell lines were cultured in DMEM (Corning) supplemented with 10% FBS. Primary T cells were cultured in T cell medium: RPMI supplemented with 10% FBS, 100 U/mL penicillin-streptomycin, 10 mM HEPES, L-glutamine, 1 mM sodium pyruvate, MEM non-essential amino acids, and 55 µM β-mercaptoethanol. T cell medium was also supplemented with cytokines (Biolegend) as needed; 10 ng/mL rhIL-2, and variable concentration of rhTGFβ1 (Biolegend) as noted per experiment.
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5

Th17 Polarization of TRP-1 Splenocytes

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TRP-1 splenocytes (which contain MHC-II–restricted CD4+ T cells expressing TRP-1-recognizing transgenic TCR Vβ14) were activated using 10 Gy-irradiated B6 456 splenocytes (feeder cells) pulsed with 1 μmol/L TRP-1 peptide and polarized to a Th17 phenotype at 2 × 106 cells/2 mL of cell media in one well of a 24-well plate with the following cocktail: 100 ng/mL rhIL6 (NIH repository), 100 ng/mL rhIL21 (Shenandoah), 30 ng/mL rhTGFβ1 (Biolegend), 10 ng/mL rhIL1β (NIH Repository), 10 μg/mL each of anti-mIFNγ clone XMG1.2, anti-mIL4 clone 11B11, and anti-mIL2 clone JES6–1A12 (Bio X Cell). Th0 polarization occurred under peptide activation with irradiated feeder cells with the following cocktail: 100 IU/mL rhIL2 (NIH repository). Cultured cells were supplemented with new media containing 100 IU/mL rhIL2 (NIH repository) throughout expansion. In experiments where indicated, RORγ agonist LYC-54143 (synthesized at Lycera) was added to the cultures during peptide activation and then again 2 days later (10 μmol/L). For further description of RORγ agonist and their use in immunotherapy of cancer, see, for example, international patent application publication WO 2015/131035.
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6

Generation of iPSC-derived Microglia

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All cells were incubated at 37°C, 5% CO2. Standard culture volumes for different plate formats were as follows: 10cm dish; 10 mL, 6-well; 2 mL, 12-well; 1 mL, 24 well; 0.5 mL, 96-well; 0.1 mL. iPSC were cultured in an in house alternative to commercial Essential 8 medium called OXE8 medium (35 ) on Geltrex™ (Gibco, #A1413201)-coated tissue culture dishes and passaged either as clumps using 0.5 mM EDTA in PBS, or using TrypLE™ Express (Gibco, #12604013). For 24 hours after TrypLE™ passaging, media was supplemented with 10 µM Y-27632 (Abcam, ab120129). Differentiation of iPSC into iPSC-Macs was carried out as previously described (35 , 36 (link)) culturing in OXM medium and with the final 7 day differentiation occurring with cells plated at stated densities. iPSC-derived microglia were cultured based on a previously publication (37 ) by differentiation of iPSC-Mac precursor cells (PreMacs) for 14 days on fibronectin (Sigma, #F4759-1MG) coated tissue culture plates in RPMI (ATCC formulation, ThermoFisher, #A10491-01) supplemented with 100 ng/ml rhIL34 (Peprotech, #200-34-100uG), 25 ng/ml rhM-CSF (Life technologies, #PHC9501), 50 ng/ml rhTGF-β1 (Biolegend, #781804) and 1% Pen/Strep, with feeding every 3 days.
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7

Chondrocyte Stimulation Protocols for OA

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Chondrocytes were stimulated with recombinant human (rh) TGF-β1 (BioLegend, San Diego, CA, USA), rhIL-1β (R&D Systems, Minneapolis, MN, USA), OA synovium-conditioned medium (OAS-cm), or a combination of these mediators, for time periods and dosages indicated in Figure legends. OAS-cm was obtained by culturing synovium from OA patients for 24 h, whereafter debris was removed by centrifugation at 300× g and medium was stored in aliquots at −20 °C until further use [48 (link)]. To inhibit ALK5 kinase activity, 5 µM SB-505124 (Sigma-Aldrich, Burlington, MA, USA) was used, dissolved in dimethyl sulfoxide (DMSO).
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