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8 protocols using sil 10a

1

Analytical Techniques for Comprehensive Sample Analysis

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Spectrophotometer EvolutionTM 60S UV-Visible (Thermo Fisher Scientific, Waltham, MA, USA), Dionex Ultimate 3000RS system (Dionex, San Jose, CA, USA) coupled with an Amazon SL spectrometer, prep-HPLC—Shimadzu LC-20AP equipped with UV-Vis detector, sampler SIL-10A and fraction collector FRC-10 (all, Shimadzu, Kioto, Japan), Varian VNMRS 300 MHz spectrometer, electronic analytical scales AN 100 “Axis” (AXIS, Warszawa, Poland), electrical temperature chamber TC80M-3 (Medlabortekhnika, Ukraine), centrifuge OPN-3 (Phizpribor, Russia), microscope ZEISS Primo Star (ZEISS, Oberkochen, Germany), pipette Thermo Scientific, Lait series 1–200 μL (Thermo Fisher Scientific, Waltham, USA), pipette Thermo Scientific, Lait series 1–50 μL (Thermo Fisher Scientific, Waltham, USA), pipette Thermo Scientific, Lait series 1–1000 μL (Thermo Fisher Scientific, Waltham, MA, USA), pipette Thermo Scientific, Lait series 1–20 μL (Thermo Fisher Scientific, Waltham, MA, USA), CO2 incubator (Binder, Tuttlingen, Germany), bioanalyzer Agilent 2100 (Agilent, Santa Clara, CA, USA).
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2

HPLC Analysis of DE In Vitro Samples

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The samples of DE in vitro experiments were analyzed using an HPLC system consisting of a system controller (SCL-10 ATVP; Shimadzu, Japan), a binary pump (LC-10 ATVP, Shimadzu), a UV-VIS detector (SPD-10 AVP, Shimadzu), a column oven, and an autoinjector (SIL-10A, Shimadzu). The separation method was under the following conditions: C18 reversed phase analytical column (4.6 × 150 mm2, 5 μm, Shim-pack VP-ODS). The mobile phase was 60 : 40 (v/v) methanol-ammonium acetate buffer (0.05 M, pH 4.0), column temperature of 40°C, UV detective wavelength of 257 nm, flow rate of 1.0 mL/min, and injection volume of 10 μL. The data were acquired and analyzed by Shimadzu Class-VP chromatography software. There was no interference from skin and a well-separated peak was detected at the retention time of 9.1 ± 0.1 min with the sensitivity of 0.02 μg/mL. The peak area correlated linearly with DE concentration in the range from 1 to 500 μg/mL.
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3

HPLC Assay for Naringenin

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The apparatus was equipped with a pump (LC-10AT, Shimadzu, Japan), UV detector (SPD-10A, Shimadzu, Japan), automatic injector (SIL-10A, Shimadzu, Japan) and Cosmosil C18 column (5 μm, 150×4.6mm, Waters, MA). Detection wavelength was set at 288 nm. Mobile phase consisted of acetonitrile: 0.1% phosphoric acid (36:64, v/v), flow rate 1.0 mL/min for naringenin assay in serum and tissue homogenate.
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4

Isolation and Characterization of Bioactive Compounds

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The isolation of major compounds detected in 96% EtOH extract was performed using prep-HPLC—Shimadzu LC-20AP equipped with UV-Vis detector, sampler SIL-10A and fraction collector FRC-10 (all, Shimadzu, Kioto, Japan). One gram of 96% EtOH extract was dissolved in DMSO and filtered through PVDF 5 µm syringe filter. Compounds were separated on Kinetex XB-C18 column (Phenomenex, USA, 150 mm × 22.1 mm × 5 µm) maintained at 25 °C. The flow rate was 20 mL/min. The mobile phase A was aqueous solution of formic acid (0.1%) and B was 0.1% HCOOH in acetonitrile. The following gradient elution was used: 0 min—2%B, 60 min—26%B and 90 min—95%B. Four hundred µL of dissolved raw extract was injected into the HPLC system ten times. Chromatogram was recorded at 254 nm. Compounds were collected at 18.6–19.5 min (6), 22.6–22.9 min (8) and 34.6–35.2 min (9). Obtained eluates were freeze dried to obtain 11 mg of 6, 4 mg of 8 and 7 mg of 9. The NMR spectra were recorded with Varian VNMRS 300 MHz spectrometer in DMSO-d6.
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5

Phytopreparations Analysis by RP-HPLC-PDA

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RP-HPLC-PDA analysis of all the phytopreparations was carried out in a Shimadzu Chromatograph equipped with two Shimadzu LC-10AD pumps, Shimadzu SIL 10 A auto-injector, UV-Vis array detector model Shimadzu SPD MX AVP. Briefly, the data acquisition and processing have treated on the Shimadzu Classlc10 software (version 1.64A). For these experimental measured at room temperature, were used a Phenomenex C18-Hydro (250 x 4.6 mm, 4 μm) with a flow of 1 mL min -1 , the injection volume was 30 μL. In addition, the 1 H-NMR (500 MHz) spectra of the samples were then obtained on the Varian Inova 500® Spectrometer. For comparison of micro molecule extraction, all samples were analyzed at the same concentration (dissolving 10 mg of the dried material in 300 μL deuterated water).
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6

NMR and GPC Characterization of Organic Compounds

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1 H and 13 C NMR spectra were acquired in CDCl3 on a Varian 500 NMR spectrometer at room temperature. The molecular weights of the products were measured by gel permeation chromatography (GPC) in chloroform on a Shimadzu SEC system (CBM-20A, SPD-10AVP, SIL-10A, LC-10ATVP, FCV-10ALVP, CTO-10AVP, RID-10A, and FRC-10A, Shimadzu, Japan).
Sample solutions were passed through a syringe filter (Sartorius Stedim, Minisart RC 4 or RC 15; pore size 0.45 µm) before GPC analysis. Shodex columns (K802, K802.5, and K805) with a guard column (Shodex, K-G) were used. Number-and weight-averaged molecular weights (Mn and Mw) and polydispersity indices (Mw/Mn) were estimated using polystyrene standards (Shodex).
Matrix-assisted laser desorption/ionization time-of-flight mass spectra (MALDI-TOF MS) were recorded on a Bruker Autoflex III machine in the positive ion linear mode. 2,5-Dihydroxybenzoic acid (DHB) was used as a matrix for these measurements.
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7

HPLC Analysis of Organic Acids in Kefir

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Organic acids were determined by HPLC according to Laye et al. (1993) and Fernandez-Garcia and Mc-Gregor (1994) with some modifications. Five milliliters of homogenized kefir samples was added to 25 mL of 0.01 N H 2 SO 4 , vortexed for 1 min, and then centrifuged (Sigma 3K30, Germany) at 7,000 × g at 4°C for 7 min. The resulting supernatants were passed through a syringe filter (pore size = 45 μm; Chromafil GF/ PET-45/25, Macherey-Nagel AG, Duren, Germany). Filtered samples were injected into a Shimadzu HPLC system equipped with a pump (Shimadzu LC-20AT), photodiode array detector (Shimadzu SPD-M20A), column oven (Shimadzu CTO-10AS VP) set at 65°C, auto sampler (Shimadzu SIL-10A), and data station (Shimadzu CBM-20A). The analyses were carried out at a flow rate 0.7 mL/min with a Shim-Pack column (150 × 4.6 mm, 4 μm; Tokyo, Japan) using 10 mM H 2 SO 4 as the mobile phase. Organic acids were defined using external standards (lactic, acetic, citric and butyric acids; Sigma-Aldrich). The quantification of the results was performed depending on standard curves of individual organic acids covering the concentration range of 10 to 500 mL/L.
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8

Size-Exclusion Chromatography of HePS

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Molecular weights of HePS-1HePS-6 were determined by size-exclusion chromatography (SEC) as described [36] , using a solvent delivery system (LC-10AD), autosampler (SIL-10A), RI detector (RID-10A; all Shimadzu, Kyoto, Japan) and a size-exclusion column (Shodex OH-PK SB-805 HQ 300 × 8 mm, Showa Denko, Tokyo, Japan). Dextran standards of M w 4.5 MDa, 1.45 MDa, 560 kDa, 350 kDa (American Polymer Standards Corporation, Mentor, OH, USA), 276.5 kDa, 196.3 kDa, 123 kDa, 43 kDa (Pharmacosmos, Holbaek, Denmark), and pullulan of 22 kDa were used for calibration. Standards (1-2.7 mg/ml) and HePSs (1-2 mg/ml) were dissolved in mobile phase (10 mM sodium citrate/citric acid pH 4.0), degassed, kept overnight, filtered (0.45 µm filters; Frisenette ApS, Knebel, Denmark), and 100 µl of the solution was subjected to SEC at a flow rate of 0.5 ml/min. The SEC data were analyzed by TriSEC conventional GPC software.
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