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6 protocols using chicken anti mouse igg hrp

1

Extracellular Vesicle Protein Analysis

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EVs and PC-3 cells (used as a positive control) were lysed in RIPA buffer (150 ml NaCl, 1% Triton X-100, 0.5% Na deoxycholate, 0.1% SDS, 50 ml Tris) and the protein concentration was assessed using Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific, USA) following manufacturer’s instructions. Thirty micrograms of EV and cell proteins were mixed with Laemmli buffer under reduction conditions, denatured for 5 min at 100 °C and loaded on 10% SDS-PAGE gel. Proteins were electroblotted to nitrocellulose membranes and the membranes were blocked with 10% (w/v) fat-free milk and then incubated with the following primary antibodies: anti-TSG101 (Abcam, # ab125011), Calnexin (Abcam, # ab22595), CD9 (Santa Cruz Biotechnology, # sc-13118) and β-actin (Abcam, # ab8224) in 1:1000 dilution. The blots were washed and incubated with horseradish peroxidase-conjugated goat anti-rabbit IgG F(ab’)2-HRP (1:2000) (Santa Cruz, #sc-3837) or chicken anti-mouse IgG-HRP (1:2000) (Santa Cruz, #sc-2962) secondary antibodies, respectively. Protein expression was visualized using Western Blotting Detection Reagent kit (GE HealthCare Lifesciences, Germany).
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2

Protein Extraction and Western Blotting

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Cells were lysed in RIPA (50 mM Tris HCl, pH 7.4; 150 mM NaCl; 1 mM EDTA; 1% NP 40; 0.1% SDS; 0.5% sodium deoxycholate) buffer with protease inhibitor (Roche, Basel, Switzerland). The protein lysate concentrations were determined using a Pierce BCA Protein Assay Kit (Thermo Fisher Scientific, Waltham, MA, USA) with bovine serum albumin (BSA) as standard. Then, equal amounts of protein samples were separated on SDS-polyacrylamide gels and blotted onto a PVDF membrane (Millipore, Darmstadt, Germany). The following antibodies were used: an anti-Myc tag antibody (1:1000, MA1213161MG, Thermo Fisher Scientific), an anti-Flag M2 antibody (1:3000, F1804, Sigma-Aldrich), an ant-β-actin antibody (1:5000, Ab8226, Abcam, Cambridge, UK), and a chicken anti-mouse IgG-HRP (1:5000, sc-2954, Santa Cruz Biotechnology, Dallas, TX, USA). Immunoblots were visualized with a chemiluminescence detection system (ImageQuant LAS 4000, GE Healthcare Bio-Sciences, Piscataway, NJ, USA).
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3

Neuronal Protein Analysis: Western Blot and Immunofluorescence

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For western blot analysis, cultured neurons were lysed in RIPA buffer (Thermo Scientific) containing proteinase and phosphatase inhibitors (Roche Diagnostics). Equal amounts of protein were separated on 4–20 % SDS PAGE gradient gels (Bio-Rad) and then transferred to PVDF or nitrocellulose membranes (Bio-Rad) for immunodetection. Primary antibodies used were: ATM2c1 and 53BP1 (Abcam); Actin (Santa Cruz Biotechnology); GFAP, GS, mTOR and P-mTORs2448 (Cell Signaling); and tau3R (Millipore). Secondary antibodies were chicken anti-rabbit IgG-HRP and chicken anti-mouse IgG-HRP (Santa Cruz Biotechnology). Chemiluminescent substrates used were SuperSignal™ West Pico Chemiluminescent Substrate and SuperSignal™ West Femto Maximum Sensitivity Substrate (Thermo Scientific). For immunofluorescence staining, neurons were fixed in 4 % paraformaldehyde for 30 min. Fixed cells were then incubated in blocking buffer (10 % goat serum, 0.5 % Triton X100 in PBS) for 1 h. Primary antibody HDAC4 (1:1000, Abcam) incubation were carried out in 4°, overnight. Alexa linked secondary antibodies (Life Technologies) were used to detect the presence of the HDAC4 antigens. Stained cells were photographed and viewed at a final magnification of 200 using Leica Application Suite/Leica DM5000B.
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4

Western Blot Analysis of STMN1 Expression

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Whole-cell lysates were extracted with cell culture lysis buffer (Promega, Madison, WI, USA), and protein concentrations were quantified with a Pierce BCA Protein Assay Kit (Thermo Fisher Scientific, USA) according to the manufacturer’s protocol. The transfer membrane was blocked and probed with the following antibodies prepared in 5% BSA (Sigma-Aldrich) overnight at 4 °C: anti-STMN1 (1:1000, 13655S, Cell Signaling, Danvers, MA, USA), anti-FLAG-M2-HRP (1:1000, A8592, Sigma-Aldrich), and anti-β-actin (1:5000, A5441, Sigma-Aldrich). The membrane was then probed at room temperature for 1 h with the corresponding secondary antibodies: bovine anti-rabbit IgG-HRP (1:3000, sc-2370, Santa Cruz Biotechnology, Dallas, TX, USA) and chicken anti-mouse IgG-HRP (1:5000, sc-2954, Santa Cruz Biotechnology). Immunoblots were visualized in an ImageQuant LAS 4000 chemiluminescence detection system (GE Healthcare Bio-Sciences, Piscataway, NJ, USA). All Uncropped blots can be seen in Figure S8.
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5

Protein Quantification and Immunoblot Analysis

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Protein extracts were quantified using a Pierce BCA Protein Assay Kit (Thermo Fisher Scientific) according to the manufacturer’s protocol. The transferred membrane was blocked and hybridized with the following antibodies in 5% BSA (Sigma-Aldrich) overnight at 4 °C: anti-ALIX (1:1000, 2171S, Cell Signaling), anti-TSG101 (1:1000, EXOAB-TSG101-1, System Biosciences), anti-CD81 (1:1000, GTX101766, Genetex), anti-Numb (1:1000, ab14140, Abcam), anti-β-catenin (1:1000, 610154, Becton-Dickinson), anti-CXCL1 (1:1000, AF-453-NA, R&D Systems Inc.), anti-CXCL2 (1:1000, AF-452-NA, R&D System Inc.), anti-FLAG tag (1:1000, F1804, Sigma-Aldrich), and anti-β-actin (1:5000, A5441, Sigma-Aldrich). The corresponding secondary antibodies were used for hybridization at room temperature for 1 h: bovine anti-rabbit IgG-HRP (1:3000, sc-2370, Santa Cruz Biotechnology), chicken anti-goat IgG-HRP (Catalog sc-2953, Santa Cruz Biotechnology), and chicken anti-mouse IgG-HRP (1:5000, sc-2954, Santa Cruz Biotechnology). Immunoblots was visualized with a chemiluminescence detection system (ImageQuant LAS 4000, GE Healthcare Bio-Sciences).
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6

Immunohistochemical and Immunoblotting Analysis of GRP78 Expression in Lung Tissue and BALF

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Immunohistochemistry was used to assess in situ GRP78 expression in paraffin-embedded lung tissue sections [13] (link), [21] (link). In brief, immunostaining was performed with a rabbit monoclonal antibody directed against Grp78 (Cell Signaling Technology, Danvers, MA) employing citrate antigen retrieval, as per the manufacturer's recommendation, biotinylated goat anti-rabbit IgG Jackson Immunoresearch West Grove, PA), and AB Complex HRP (Vector Laboratories, Burlingame, CA). Imaging methods have been previously detailed [13] (link), [21] (link).
GRP78 in BALF was detected by immunoblotting. Concentrated BALF (12 mcg protein) specimens were electrophoresed and processed as described above. Membranes were incubated with 1∶1000 dilutions of mouse anti-human GRP78 mAb (R&D Systems) at 4°C, followed by 1∶4000 dilutions of chicken anti-mouse IgG-HRP (Santa Cruz Biotechnology, Santa Cruz, CA). This immunoblotting method was validated using both commercial rGRP78 and lysates of normal human CD14+-derived macrophages (Figure S2 in File S1).
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