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5 protocols using iseq00005

1

Western Blot Analysis of Neuronal Proteins

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Proteins were isolated from mouse brain cortices and hippocampus as described in Ruiz-Reig et al. (2022) (link). Equal volumes of protein (20 μg) were loaded on 4%–12% Bis-Tris (BoltTM ThermoFhiser NW00080 and NW04125), separated by MOPS running buffer (BoltTM Thermo Fisher B000102), and transferred to PVDF membranes (Millipore ISEQ00005). Membranes were incubated with the following antibodies: Chicken anti-GAPDH (Millipore AB2302, 1:5,000); Rabbit anti-KIF2A (AbCam ab71160, 1:2,000); Mouse anti-Vgat (Synaptic Systems 131011, 1:2,000); Mouse anti-GAD67 (Millipore MAB5406, 1:2,000); Rabbit GABAAα1 (Alomone Labs AGA001, 1:1,000); Rabbit GABAAα2 (Synaptic Systems 224103, 1:2,000); Rabbit GABAAα3 (Alomone Labs AGA003, 1:1,000); GABAAα5 (Alomone Labs AGA025, 1:1,000). Membranes were then incubated with HRP-coupled secondary antibodies (1:20,000) and revealed using SuperSignal™ West Pico PLUS Chemiluminescent Substrate (Thermo Fisher 34577). Signals were detected with Fusion Pulse platform (Vilber) and quantified with Fiji (ImageJ). Values were normalized to GAPDH.
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2

Detection of Opioid Receptor Subtypes

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For detection of μ-/δ-/κ-opioid receptors (MOR/DOR/KOR), 10 μg of proteins isolated from lumbar dorsal horns were loaded into wells of 3–8% gradient SDS-PAGE gels (Criterion XT, Biorad). Proteins were transferred to ø0.2 μm PVDF membranes (Millipore #ISEQ00005) after activation in 100% methanol. Membranes were immunoblotted with MOR (1/500, Abcam #Ab10275), DOR (1/1000, Millipore #Ab1560) or KOR antibodies (1/500, Invitrogen #44302G), after a blocking step for 45 minutes in Tris-buffered saline, 0.1% Tween, 5% non-fat dry milk, pH 7.6. Membranes were then incubated overnight with antibodies diluted in Tris-buffered saline, 0.1% Tween, pH 7.6, with 2% non-fat dry milk. Goat anti-rabbit fused to horseradish peroxidase - HRP (1/10000, Jackson Immunoresearch; room temperature, 2h) were used as secondary antibodies. Protein bands were detected with Azure Sapphire Biomolecular Imager (Azure Biosystems) after applying chemiluminescent reagent for 2 minutes (ThermoFisher Scientific #34557). Bands were quantified for optical densitometry using Image J software (National Institute of Health). Actin protein levels were quantified in total lysates for loading control (Sigma Aldrich #1978).
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3

Western blot analysis of KITL in ovarian tissues

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Total protein from preGC-Kitl−/− and the control ovaries at 23 dpp were extracted using WIP lysis solution (BioChip, 1:10,000); 20 μg proteins were separated by 10% SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, ISEQ00005). After being blocked with 5% nonfat-dry milk for 60 min, the PVDF membranes were incubated at 4 °C overnight with the primary antibodies to KITL (34 kDa, 1:2000, rabbit, ab9753, Abcam), β-ACTIN (42 kDa, 1:2000, mouse, AA128, Beyotime) was used as an internal control, and then the secondary antibodies (1:5000, ZB-2301, ZB-2305 from ZSGB-BIO) were incubated. The membranes were visualized using the SuperSignal chemiluminescent detection system (Additional file 7: Fig. S7).
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Western Blot Analysis of Protein Expression

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To detect protein expression in mouse materials, total proteins were extracted using WIP Tissue and Cell lysis solution (BioChip, 110000) according to the manufacturer’s protocol. Electrophoresis was performed with 50 μg total proteins separated by 10% SDS-PAGE and transferred to polyvinylidene fluoride membranes (Millipore, ISEQ00005). The membranes were incubated overnight at 4 °C with the appropriate primary antibodies listed below: anti-RDX (78 kDa, 1:500, ab52495, Abcam), anti-p-ERM (78 kDa, 1:500, mAb#3726, Cell Signaling Technologies). The appropriate secondary antibody (ZB-2301, ZB-2305 from ZSGB-BIO) was diluted 1:5000 in TBST (TBS plus 0.5% Tween 20). Tubulin (1:5000, Beyotime, AF5012) was used as an internal control. The membranes were visualized using the SuperSignal chemiluminescent detection system (Thermo Scientific, 32109). Original blots can be found in the Source data file.
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5

Cas9-mediated Protein Analysis in Retinal Tissues

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RPE/choroids and neural retinas from WT and Cas9 mice were lysed in 1x RIPA buffer (Thermo Scientific 89900, Rockford, IL, USA) containing protease (Thermo Scientific, A32963), and phosphatase (Thermo Scientific A32957, Rockford, IL, USA) inhibitor cocktails. Tissue lysates were quantified using the Rapid Gold BCA Protein Assay Kit (Pierce A53226, Rockford, IL, USA), and 25 µg protein was loaded onto 4–20% Tris-Glycine gels (Thermo Scientific XP04200BOX, Rockford, IL, USA). Proteins were transferred onto PVDF membrane (Millipore ISEQ00005, Burlington, MA, USA), blocked with 5% skimmed milk in phosphate-buffered saline (PBS) for 1 h, and incubated overnight at 4 °C in an orbital shaker using the following primary antibodies: anti-Cas9 (1:1000; Cell Signaling Technology 19526, Danvers, MA, USA) or anti-β-actin (1:1000; Cell Signaling Technology 4970, Danvers, MA, USA). Membranes were washed thrice with PBS-T and stained with HRP-conjugated secondary antibodies (1:5000; Invitrogen G21234, Carlsbad, CA, USA) for 2 h at room temperature. Stained membranes were washed thrice in PBS-T, and then developed using SuperSignal West Pico PLUS Chemiluminescent Substrate (Thermo Scientific 34580, Rockford, IL, USA) and imaged using a gel imager (Azure Biosystems 300Q, Dublin, CA, USA).
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