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10 protocols using wheat germ agglutinin alexa fluor 594 conjugate

1

Antibody Characterization for RyR1, SERCA, DHPR, HTT, STIM1, JPH1, Calnexin

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Rabbit polyclonal antibody against RyR1 has been previously described (Marty et al., 1994 (link)), as are antibodies against SERCA (kindly provided by Dr. M.J. Moutin; Moutin et al., 1994 (link)). Antibody against the alpha subunit of DHPR was from Abcam (ref ab2862), antibodies against HTT were from Abcam (ref ab109115, used for Western blot) and Euromedex/IGBMC (4C8, used for immunoprecipitation), antibodies against STIM1 from Merck Millipore (ref AB9870) and Ozyme (clone D88E10; ref 5668S; Cell Signaling Technology), antibodies against JPH1 from Sigma-Aldrich (ref. WH0056704M4) and Invitrogen (ref 40-5100), antibody against Calnexin from Enzo (ref ADI-SPA-860), antibody against tubulin from Sigma-Aldrich (ref Tub2.1), the antibody against cMyc from Santa Cruz (sc40), and the antibody against V5 from Thermo Fisher Scientific (ref R960-25). Wheat germ agglutinin (WGA) Alexa Fluor 594 conjugate was from Thermo Fisher Scientific. Secondary antibodies used for Western blot were labeled with HRP (Jackson Immuno Research), and the antibodies used for immunofluorescent staining were labeled with Alexa Fluor 488, Cy-3, or Cy-5 (Jackson Immuno Research). Tamoxifen was from Sigma-Aldrich.
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2

Neutrophil Activation and Cytoskeletal Analysis

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PMA, A23187, Triton X-100, and fetal calf serum (FCS) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Wheat germ agglutinin (WGA)-AlexaFluor 594 conjugate, Phalloidin-AlexaFlour 488 conjugate, and DAPI were obtained from Thermo Fisher Scientific (Waltham, MA, USA). Dextran T-500 was obtained from Pharmacosmos (Holbæk, Denmark). RPMI1640, Hoechst 33342, Ficoll-Hypaque, L-glutamine, and HEPES were obtained from PanEco (Moscow, Russia). Coverslips and 24-well plates were from SPL Co., Ltd. (Pyeongtaek, Republic of Korea). FITC-labeled monoclonal mouse anti-human MPO priming antibodies were purchased from Invitrogen (Waltham, MA, USA).
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3

Bacterial Cell Staining with Wheat Germ Agglutinin

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One milliliter of ON culture was centrifuged at 3,500 rpm for 3 min, and the supernatant was removed and resuspended in 100 μl 1x PBST (1x PBS + 0.1% Tween 20; Sigma-Aldrich). The resuspended cells were incubated for 5 min at room temperature (RT) in darkness with 50 μl 0.1 mg/ml Wheat Germ Agglutinin, Alexa Fluor™ 594 Conjugate (Invitrogen; resuspended in 1x PBS). The samples were centrifuged again and washed two times in 500 μl 1x PBST. The bacteria were resuspended in 1x PBST and spotted on poly-lysin [poly-lysin solution 0.1% (w/v); Sigma-Aldrich] coated microscopy slides. Bacteria were visualized by phase contrast (PH) and Texas-Red using an inverted fluorescence Olympus IX83 microscope. Images were analyzed using FIJI ImageJ (Schindelin et al., 2012 (link)).
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4

Chlamydia muridarum Infection Imaging

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McCoy cells seeded onto glass coverslips in 12 well trays were infected with
C. muridarum P+ and plasmid-free
C.muridarum P- (at an MOI=1.0) as described above, and then fixed at 4-hour time intervals between 0 and 40 hours post-infection using 4% paraformaldehyde for 15 minutes. Cells were washed in PBS and permeabilised in saponin buffer (0.1% saponin, 10% foetal calf serum, 0.1% sodium azide) for 1 hour at 4°C. Primary and secondary antibodies were added to the coverslips, and incubated in saponin buffer for 1 hour at room temperature; the coverslips were washed in saponin buffer between steps. A mouse monoclonal primary antibody raised against genus-specific LPS (Chlamydia Biobank Cat. No. #CT601 RRID: AB2721933) was diluted 1:1,000 and combined with an anti-mouse-Alexa Fluor® 488 conjugate secondary antibody (Invitrogen™ Cat. No. A11001 RRID AB_2534069) was used (1:200 dilution) to visualize
C. muridarum. Cells were counterstained with 1 µg/ml DAPI (Fisher Scientific) and Wheat Germ Agglutinin Alexa Fluor® 594 conjugate (Invitrogen™ Cat. No W11262)), washed a final time in PBS and mounted onto slides with Mowiol 4-88 (Sigma). Images were captured using a Leica TCP SP5 confocal microscope.
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5

Quantifying Cardiomyocyte Cell Surface Area

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Hearts were dissected in PBS, incubated in 30% sucrose overnight at 4°C and embedded in O.C.T. Compound (Tissue-Tek) for cryosectioning. Then, 4 µm sections were stained with Wheat Germ Agglutinin, Alexa Fluor 594 Conjugate (Invitrogen, W11262) for 10 min and washed 3× for 10 min each with PBS. Sections were mounted with VECTASHIELD Antifade Mounting Medium with DAPI (Vector Laboratories) and imaged under a Nikon Eclipse Ni microscope. Cardiomyocyte cell surface area was quantified using ImageJ from images of the right and left ventricles. Fifty cardiomyocytes in three view fields of three different sections from each of six hearts per genotype were measured.
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6

Fluorescence Labeling of Biomolecules

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Tetraethyl orthosilicate (TEOS, 99.0%), fluorescein isothiocyanate (FITC), 3-aminopropyl-trimethoxysilane (APTMS, 97%), 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N–lissamine rhodamine B sulfonyl ammonium salt (Rhodamine B PE) and fluorescein isothiocyanate labeled Ulex Europaeus Agglutinin (FITC-UEA1) were obtained from Sigma-Aldrich, USA. Other materials used include Silane-Polyethylene glycol-succinimidyl ester (Silane-PEG-NHS, MW 5000 Nanocs), 2-[Methoxy(polyethyleneoxy)propyl] trimethoxysilane, (PEG-silane, MW 596–725 g/mol, 9–12 EO, Gelest), Hexadecyltrimethylammoniumbromide (CTAB, 99%, Acrôs organics), Diacetylenic phosphatidylcholine 1,2-bis(tricosa-10,12-diynoil)-sn-glycero-3-phosphocholine (DAPC), N-glutaryl-L-α-phosphatidylethanolamine dimyristoyl (DMPC-GLU) (Avanti Polar Lipids, Alabaster, AL), Wheat Germ Agglutinin Alexa Fluor® 594 Conjugate (WGA594, Invitrogen), and 4',6-diamidino-2-phenylindole (DAPI, Invitrogen). Deionized water (18 MΩ) was used in all the experiments.
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7

Quantifying Chlamydia trachomatis Inclusion Size

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12-well trays containing glass microscope coverslips were seeded with McCoy cells the day before the start of the experiment. Cells were infected with the appropriate amount of C. trachomatis A2497WT, A2497P-, or A2497P-/pSW2::GFP inoculum to give an MOI of 1. The 12 well trays were centrifuged and incubated at 37°C/5% CO2 as described above. At each time point, cells were fixed using 4% paraformaldehyde for 15 min. Cells were washed in PBS and permeabilised in saponin buffer (0.1% saponin, 10% foetal calf serum, 0.1% sodium azide) for 1 h at 4°C. Monoclonal antibody MAb29 was added (in saponin buffer) at 1:1,000 dilution and cells were incubated for 1 h at room temperature. These were then washed three times in saponin buffer before the anti-mouse-Alexa-fluor 488 conjugate antibody (Fisher Scientific) was added at 1:200 dilution. This was again incubated for 1 h at room temperature, washed as before and counterstained with 1 μg/ml DAPI (Fisher Scientific) and Wheat Germ Agglutinin Alexa Fluor® 594 conjugate (Invitrogen), washed a final time in PBS and mounted onto slides with Mowiol mounting medium (Sigma Aldrich). Images were captured using a Leica TCP SP8 confocal microscope. Areas of inclusions were measured at each time point using ImageJ (version 1.51j8) and compared using a one-way ANOVA using GraphPad Prism (version 7.03).
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8

Immunofluorescence Analysis of Cellular Chaperones

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Cells were collected, washed twice with PBS and fixed in 4% paraformaldehyde for 20 min. After the washing with PBS, cells were incubated in 1% BSA in PBS for 1 h and subsequently incubated with CRT (Enzo Life Sciences, 1:100), HSP70 (R&D, 1:100) or HSP90 (Enzo Life Sciences, 1:100) antibody in PBS overnight at 4 °C. Cells were washed with PBS and incubated with AlexaFluor488 goat anti-mouse (Molecular Probes, 1:200) IgG1 (CRT and HSP90) or with AlexaFluor488 goat anti-mouse IgG2A (HSP70) secondary antibody (Molecular Probes, diluted 1:200) for 1 h at 4 °C. Cells were washed with PBS and incubated with Wheat Germ Agglutinin, Alexa Fluor 594 Conjugate (Invitrogen, 5 μg/ml) for 10 min at room temperature. Then the cells were washed with PBS and mounted on slides with ProLong Gold antifade reagent with DAPI (Molecular Probes) using StatSpin Cytofuge. Cells were analysed under a DMI 6000 inverted Leica TCS AOBS SP5 tandem scanning confocal microscope and an × 63 oil immersion objective.
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9

Subcellular Localization of Fatty Acid Transporters

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Cells were plated on glass coverslips, fixed with 4% paraformaldehyde (PFA) and incubated overnight at 4°C with primary antibodies against CD36 (rabbit, HPA002018, 1:200, Sigma-Aldrich), FABPpm (mouse, 1:200, Novus Biologicals) FATP1 (mouse, 1:200, Novus Biologicals), FATP-4 (mouse, 1:200, Abnova). For plasma membrane labeling, Alexa Fluor 594 wheat germ agglutinin conjugate (W11262, Molecular Probes, Eugene, OR) was used. Samples were stained with Alexa Fluor 488 (A11059, A11001 and A11008, 1:2,000, Molecular Probes) conjugated secondary antibodies. After nuclei counterstain with Hoechst, coverslips were imaged with an inverted laser scanning confocal microscope (Zeiss LSM 510 equipped with a 63× oil immersion objective, Thornwood, NY). Z-stack confocal images were taken at 30-s intervals using AIM (version 3.2, Zeiss), and images were compiled using Zeiss LSM Image Browser (versions, 4.2, Zeiss). For epifluorescent microscopy, images were taken with a Zeiss Axiovert 100 microscope.
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10

Subcellular Localization of Fatty Acid Transporters

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Cells were plated on glass coverslips, fixed with 4% paraformaldehyde (PFA) and incubated overnight at 4°C with primary antibodies against CD36 (rabbit, HPA002018, 1:200, Sigma-Aldrich), FABPpm (mouse, 1:200, Novus Biologicals) FATP1 (mouse, 1:200, Novus Biologicals), FATP-4 (mouse, 1:200, Abnova). For plasma membrane labeling, Alexa Fluor 594 wheat germ agglutinin conjugate (W11262, Molecular Probes, Eugene, OR) was used. Samples were stained with Alexa Fluor 488 (A11059, A11001 and A11008, 1:2,000, Molecular Probes) conjugated secondary antibodies. After nuclei counterstain with Hoechst, coverslips were imaged with an inverted laser scanning confocal microscope (Zeiss LSM 510 equipped with a 63× oil immersion objective, Thornwood, NY). Z-stack confocal images were taken at 30-s intervals using AIM (version 3.2, Zeiss), and images were compiled using Zeiss LSM Image Browser (versions, 4.2, Zeiss). For epifluorescent microscopy, images were taken with a Zeiss Axiovert 100 microscope.
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