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6 protocols using vorinostat saha

1

Cytotoxicity of Epigenetic Inhibitors

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The minimum essential medium (MEM), fetal bovine serum (FBS), penicillin-streptomycin (100X), and 0.25% trypsin-EDTA solution (1X) were obtained from Invitrogen Corp., Life Technologies (Carlsbad, CA, USA). Trichostatin A (TSA) (>98% purity) was from Selleckchem (Houston, TX, USA). Romidepsin (FK228) (>98% purity) was purchased from Apexbio Technology LLC (Houston, TX, USA). Vorinostat (SAHA) and dimethyl sulfoxide (DMSO) were from Sigma-Aldrich (St. Louis, MO, USA). Romidepsin, TSA or SAHA were dissolved in DMSO separately and stored at −20°C. The CellTiter 96 AQueous One Solution Cell Proliferation Assay was from Promega Corp. (Madison, WI, USA).
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2

Colon Epithelial Cell Stimulation

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HCEC (Human Colon Epithelial Cells) were obtained from Nestlé Ltd. Research Center (Lausanne, Switzerland). Cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) with 2 mM L-glutamine supplemented with 10% fetal bovine serum, 45 IU/ml penicillin, 45 IU/ml streptomycin, 9.11 µl/ml sodium pyruvate, 4.9 × 10–3 µl/ml phosphoethanolamine, 4.9 × 10–3 µl/ml ethanolamine, and 3 mg/ml BSA until 90–95% confluency before being subcultivated. For each experiment, 1 × 106 cells were seeded on 150 mm diameter dishes. After 24 h, when cells were in the exponential phase of growth, they were stimulated with 1 µM Vorinostat (SAHA, Sigma-Aldrich, Steinheim, Germany), or 30 ng/ml (~ 0,1 µM) Trichostatin A (TSA, Sigma-Aldrich, Steinheim, Germany) for the indicated time period. For the last 24 h of the incubation TNFα (20 ng/ml) (Miltenyi Biotec GmbH, Bergisch Gladbach, Germany) or vehicle was added. Vehicle controls were performed for every time point. Cultivation of cells was carried out in a humidified incubator at 37 °C with 5% CO2 in O2. Before use, the cells were tested for mycoplasma contamination.
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3

Macrophage response to pneumococcus

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Whole blood was obtained from healthy volunteers. Ethical approval was granted by South Sheffield Regional Ethics committee (07/Q2305/7). Peripheral blood mononuclear cells were separated by differential centrifugation using a Ficoll-Paque gradient and differentiated into monocyte derived macrophages (MDM) for 14 d as previously described in 24 well plates (Corning) (26 (link)). Bacteria were washed in PBS and re-suspended in RPMI 1640 supplemented with 10% pooled human immune serum (from previously vaccinated volunteers with demonstrable antibody levels to serotype 2 pneumococci) (27 (link)). MDM were challenged with either opsonised S. pneumoniae, Δply or PBS, at a MOI of 10, rested on ice for 1 h and incubated at 37°C in 5% CO2 for a further 3 h (28 (link)). For certain experiments cells were treated with 3 μM vorinostat (SAHA, Sigma) or 0.5% DMSO (vehicle control) for 30 min prior to bacterial challenge and vorinostat reintroduced after bacterial challenge.
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4

Cytotoxic Drug Evaluation Protocol

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Reagents and drugs utilized in this study were purchased as follows: RPMI-1640 media (11875-119), fetal bovine serum (FBS; 16000-044), Epirubicin hydrochloride (CAS 56390-09-1), Vorinostat/SAHA (CAS 149647-78-9), Methotrexate hydrate (CAS133073-73-1), Cisplatin (CAS 15663-27-1), Sorafenib (CAS 284461-73-0) from Sigma-Aldrich (St. Louis, MO, USA); Imatinib (CAS 220127-57-1) from STEMCELL Technologies Inc. (Vancouver, BC, Canada); Trizol reagent (15596026) from Invitrogen (Carlsbad, CA, USA); DNase I Solution (1 unit/ μ L), RNase-free (89836), and RevertAid First Strand cDNA Synthesis Kit from Thermo Scientific (Waltham, MA, USA); amfiSure qGreen Q-PCR Master Mix(2X), Without ROX (Q5600-005) from GenDEPOT (Katy, TX, USA).
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5

Colorectal Cancer Cell Line Treatments

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Human colon carcinoma HCT116, SW480 (obtained in 2013 from the American Type Culture Collection, Manassas, VA, USA; experiments started at P15 and P70 for HCT116 and SW480 respectively) and TC7 (kindly provided by M. Rousset), [39 (link)] cells were maintained at 37°C in standard culture conditions. The mutational status of BRAF, PI3K and KRAS has been validated as previously shown [40 ]. Cells were treated during exponential growth 30% confluence with 5-azacytidine at 2.5 μM Vidaza®, 25 mg/ml (Celgene) every day for up to 10 days; with sodium butyrate at 10 mM 110.09 g/mol (Sigma), sodium propionate at 15 mM 96.06 g/mol (Sigma), SAHA Vorinostat at 5 and 50 μM 264.32 g/mol (Sigma) or Valproic Acid at 1 mM during 24 hours 166.19 g/mol (Sigma). Experiments were run in triplicate with n = 4 wells in each experiment.
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6

Preparation of Epigenetic Inhibitor Stocks

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SAHA/Vorinostat, Romidepsin, I-BET762 (all from Sigma-Aldrich, St. Louis, MO), CPI-0610, OTX015, and JQ1 (all from Cayman Chemicals, Ann Arbor, MI) were dissolved in DMSO to stock concentration of 10-50 mM, stored at −20°C. Serial dilutions were freshly made in DMSO for all cellular assays. The final concentration of DMSO in the medium was less than 0.1%, which did not show any effect on cell growth.
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