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14 protocols using wortmannin

1

Drug Sensitivity Assay Protocol

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Drug sensitivity test was carried out by seeding 3000 cells per well. After 24 h, specific drug concentration of RAS inhibitor (manumycin), PIK inhibitor (wortmannin, CAS 19545‐26‐7, Santa Cruz Biotechnology, Dallas, TX, USA), and cisplatin and 5‐FU (Merck Darmstadt, Germany) were added accordingly. MTT assay was used to measure cell viability. All animal studies were blinded and conducted following the guidelines according to the Laboratory Animal Use of Kaohsiung Veterans General Hospital with a protocol approved by the Animal Study Committee (VGKHS‐2019‐A019).
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2

Modulating Inflammatory Responses In Vitro

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Recombinant mouse C5a (R&D Systems, Minneapolis, MN, USA), LPS (Escherichia coli, o111:B4), adenosine triphosphate (ATP, both from Sigma-Aldrich, St. Louis, MO, USA), wortmannin (Santa Cruz Biotechnology, Santa Cruz, CA, USA), and SB 203580 (InvivoGen, San Diego, CA, USA) were all used at concentrations indicated in the figures.
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3

Caspase inhibition and compound effects

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2 × 106 MCF7 cells were seeded in 25 cm2 flasks. After 24 h, cells were pre-treated with 50 μM of the pan-caspase inhibitor Z-VAD-FMK (BD Pharmingen) or 100 nM wortmannin (Santa Cruz Biotechnology, Heidelberg, Germany) for 1 h before co-incubating them with 25 μM of compound 5, 30 μM of compound 15 or vehicle (maximum amount of DMSO used in the treatments) for 48 h. Cells were collected and processed with the Apo-Direct kit as described previously.
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4

Glioblastoma Cell Line Characterization

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The human glioblastoma cell lines U87 MG, U118 MG, U251 MG, A172, LN-229, and T98G were purchased from Shanghai Institute of Cell Biology, Chinese Academy of Sciences (Shanghai, China). The cells were cultured in DMEM supplemented with 10% fetal bovine serum (Gibco, Grand Island, NY, USA).
The antibodies against NAG-1, Bcl-2, Bax, caspase-3, caspase-8, caspase-9, cytochrome c, p-PI3K(p85 Tyr458)/PI3K(p85), p-Akt(Ser473)/Akt, p-ERK1/2(Thr202/Tyr204)/ERK1/2, p-Smad2(Ser465/467)/Smad2, p-Smad3(Ser423/425)/Smad3, and β-actin were purchased from Cell Signaling Technologies (Beverly, MA, USA). Wortmannin, LY294002, Smad2 siRNA, and Smad3 siRNA were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Ac-IETD-FMK and Ac-LEHD-FMK were purchased from KeyGEN Biotech Co., Ltd. (Nanjing, China). Enhanced chemiluminescence (ECL) detection system was purchased from Amersham Life Science (Arlington Heights, Illinois, USA). Human NAG-1 ELISA Kit was obtained from Huamei Biological Company (Wuhan, China). Mitochondrial membrane potential assay kit with JC-1 and protein A/G agarose beads were obtained from Beyotime Institute of Biotechnology (Shanghai, China). X-treme GENE siRNA transfection reagent was purchased from Roche Applied Science.
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5

Investigating Cellular Stress Pathways

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Where indicated, the following drugs were used: VER‐155008 (Santa Cruz Biotechnology), MG132 (Sigma‐Aldrich), nocodazole (AppliChem), wortmannin (Santa Cruz Biotechnology), sodium arsenate dibasic heptahydrate (Alfa Aesar).
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6

Chemical Inhibitors Affecting Lm Infection

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All chemical inhibitors were added to cells 1 hour prior to infection and kept in the culture medium throughout the experiment. To avoid inhibition of bacterial transcription by actinomycin D, cells pre-treated with actinomycin D were washed twice with PBS immediately prior to infection and medium without inhibitor was used for the remainder of the experiment. Inhibitors had no effect on Lm viability, as measured by exposing Lm to each inhibitor for 1 hour in D-10 and enumerating CFU. All inhibitors were dissolved in DMSO except bpV(pic) which was dissolved in water. Inhibitors were used at the following concentrations: actinomycin D (Sigma-Aldrich), 10 μg/mL; cycloheximide (Sigma-Aldrich), 1 μg/mL; bpV(pic) (Cayman Chemical Company), 5 μM; CHIR99021 (Cayman Chemical Company), 10 μM; parthenolide (Sigma-Aldrich), 10 μM; wortmannin (Santa Cruz Biotechnology), 100 nM; INK1117 (GlpBio), 1 μM; TGX221 (Cayman Chemical Company), 10 μM; IC87114 (Cayman Chemical Company), 10 μM; and IPI549 (MedChemExpress), 50 nM.
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7

Molecular Signaling in Cellular Stress

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Cells were plated, grown to 70% confluence, and then subjected to treatment with the indicated drugs. The cells were also treated with Wortmannin (Santa Cruz Biotechnology, Santa Cruz, CA, USA), or chloroquine (Sigma-Aldrich) for 24 h, combined with or without RITA. Cells were lysed at 4 °C in radioimmunoprecipitation assay (RIPA) lysis buffer (Thermo Fisher Scientific). A total of 50 µg protein was resolved by SDS-PAGE on 10–12% gels, transferred to nitrocellulose or polyvinylidene difluoride membranes, and probed with primary and secondary antibodies. The following primary antibodies were used: poly(ADP-ribose) polymerase (PARP) and cleaved PARP, cleaved caspase 3, beclin-1, Atg5, p62, LC3, Bax, Bcl-2, Nrf2, heme oxygenase-1 (HO-1), NAD(P)H: quinone oxidoreductase 1 (NQO1) (Cell Signaling Technology, Danvers, MA); and RAD51, γH2AX, glutamate-cysteine ligase (GCLC) catalytic subunit (GCLC) and modifier subunit (GCLM), (Abcam, Cambridge, UK). β-actin (Sigma-Aldrich) was used as a loading control. All antibodies were diluted to between 1:250 and 1:5000.
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8

Adrenergic Receptor Modulation of Macrophage Phenotype

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Epinephrine, norEpinephrine, ICI 118,551 (all from Sigma, St. Louis, MO, USA), 2’5’-dideoxyadenosine (2’5’-DDA; Santa Cruz Biotech, Santa Cruz, CA, USA), SQ22536 (Santa Cruz Biotech), PKA inhibitor 14–22 amide (EMD Millipore, Billerica, MA, USA), and wortmannin (Santa Cruz Biotech) were all used at the concentrations listed for each figure. LPS (E. coli o111:B4) was purchased from Sigma. α1 (prazosin, Sigma), α2 (RX821002, Tocris, Bristol, United Kingdom), β1 (betaxolol, Sigma), and β3 (SR59230A, Sigma) adrenergic receptor antagonists were also used in these studies. Optimal concentrations for these reagents were determined in preliminary experiments (data not shown). AlexaFluor647 anti-mouse CD206 was from BioLegend (San Diego, CA, USA).
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9

Chlamydomonas Strain Generation and Culture

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Chlamydomonas reinhardtii WT 4A+ (CC-4051) was obtained from the Chlamydomonas Resource Center (http://www.chlamycollection.org). Chlamydomonas strain OL-Rps6 expressing OLLAS-tagged RPS6 was generated in this study as described below. Chlamydomonas cells were grown under continuous illumination at 25 °C in Tris-acetate phosphate (TAP) medium as described (Harris, 1989 ). When required, cells in exponential growth phase (106 cells ml–1) were treated with concanamycin A (Santa Cruz Biotechnology, sc-202111A), wortmannin (Santa Cruz Biotechnology, sc-3505), or 3-methyladenine (3-MA; Sigma, M9281), or subjected to nitrogen or phosphate limitation.
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10

Purification and Analysis of Recombinant CGL

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Natural CGL was isolated as described previously16 (link). Recombinant CGL was prepared according to our previous study19 (link) and further purified using Pierce High Capacity Endotoxin Removal Spin Columns (Thermo Fisher Scientific, USA). LPS (from Escherichia coli 0111:B4), N-acetylcysteine (NAC), PD98059, SP600125, SB203580, PDTC and mouse antibodies against mouse phospho-ERK1/2, phospho-JNK1/2, phospho-p38 and actin were purchased from Sigma-Aldrich (St. Louis, MO). Gö6976, Rottlerin, Wortmannin, LY294002, sc-3060, and antibodies against phospho-PKCα/δ, IL-1β, iNOS, COX-2 and IRAK2, as well as secondary antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). IL-1β, IL-6, TNF-α and MCP-1 ELISA kits were purchased from R&D Systems (Minneapolis, MN). Pierce™ LAL Chromogenic Endotoxin Quantitation Kit was purchased from Thermo Scientific (Rockford, IL).
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