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7 protocols using p limk1

1

Antibody Production and Characterization

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GST-fusion protein containing human Neph2 (aa 563–778) and synthetic peptide mimicking the last 10 aa of human Neph2 were used to immunize rabbits (1344 and 1468, respectively). For CaMKIIα/β polyclonal antibodies, GST-fusion proteins containing full-length CaMKIIα were used to immunize guinea pigs (Gp). The following antibodies have been described: EGFP (1173, Rb; Ko et al., 2003 (link)), PSD-95 (1402, Gp), SAP102 (1447, Gp) (Choi et al., 2005 (link)), PSD-93 (1634, Rb), SAP97 (1443, Gp) (Oh et al., 2010 (link)), CASK (1640, Rb), GluA1 (1193, Rb), GluA2 (1195, Rb) (Kim et al., 2009 (link)). The following antibodies were purchased: synapsin I (Chemicon), synaptophysin (Santa Cruz), GluN2A (Invitrogen), GluN2B (BD Transduction Lab), mGluR5 (Millipore), PAK1/3, p-PAK1/3, LIMK1, p-LIMK1, Cofilin, p-Cofilin, and ROCK1 (Cell Signaling), α-Tubulin (Sigma), and NeuN (Millipore).
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2

Western Blot Protein Analysis

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Cells were lysed with RIPA lysis buffer containing protease inhibitor (Roche, USA), then 30 μg total protein were subjected to 8% SDS-PAGE gel. Protein was transferred to a PVDF membrane (Millipore, USA) after separation. Membranes were blocked with 5% non-fat milk, and incubated with primary antibody overnight. FAK1 (Cell signaling technology, USA), ROCK1 antibody (Origene, USA), p-LIMK1 (Cell signaling technology, USA), GAPDH antibody (Kangchen, China), p53 (Santa Cruz, USA) and Flag (or DKK) antibody (Abmart, China) were used. Then appropriate secondary antibodies were added for 2 h at room temperature. Finally, protein were detected with enhance chemiluminescence (ECL) reagent (Thermo pierce, USA).
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3

Western Blot Analysis of Signaling Proteins

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Total cell lysates or pull-downs were Western blotted using routine procedures. The primary antibodies used were: Rac (Rac1,2,3), Cdc42, Bcl-xL, Bcl-2, Mcl-1, PAK1, PAK2, phospho (p) -PAK1(T423)/PAK2(T402), p-PAK1(S199/204)/PAK2(S192/197), p-PAK1(S144/204)/PAK2(S141), LIM kinase (LIMK1), p-LIMK1/2(Tyr507/Thr508), Cofilin, p-Cofilin(S3), STAT3, p-STAT3(Y705), p-P-38 MAPK (T180/Y182), p-ERK (T202/Y204), p-Akt (S473), and Akt (Cell Signaling Technology, Inc.) and β–actin (Sigma).
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4

Biochemical Characterization of TIPE2 Signaling

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Assays were performed as we previously described10 (link),18 (link),43 (link). The purity of BMDMs populations was greater than 95% as determined by flow cytometry after staining cells with anti-CD11b-FITC (eBioscience) and anti-F4/80-APC (eBioscience), and the viability was greater than 99% as determined by trypan blue staining. Antibodies to the following antigens were used for immunoblotting and co-immunoprecipitation: Rac1 (EMD Millipore), Rac1/2/3, RhoGDI, AKT, p-AKT (T308), p-AKT (S473), p-GSK-3β (S9), cofilin, p-cofilin (S3), p-PAK1/2 (S144/S141), p-LIMK1 (Thr508)/LIMK2 (Thr505), ERK1/2, p-ERK1/2 (T202/Y204), p-p38 (T180/Y182), mTOR, GAPDH, integrin-β1 (Cell Signaling Technology), TIPE2 (Proteintech), Flag, actin (Sigma-Aldrich,), HA (Cell Signaling Technology). Control IgG (Santa Cruz Biotechnology) anti-rabbit IgG-HRP, and anti-mouse IgG-HRP (GE Healthcare Life Sciences) were also used.
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5

Endothelial Cell Signaling Pathway Analysis

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HUVECs were obtained from Thermo Fisher Scientific Inc. (Waltham, MA, USA) maintained in vascular cell basal medium (ATCC, Manassas, VA, USA) and used before to passage 7. Fetal bovine serum, phosphate-buffered saline (PBS), penicillin–streptomycin (PS) and 0.25% (w/v) trypsin/1 mM EDTA were all purchased from Invitrogen (Carlsbad, CA, USA). EC growth supplement, heparin, gelatin were supplied by Sigma (St Louis, MO, USA). Dimethyl sulfoxide (DMSO) and anti-VE-cadherin antibody, phospho [Tyr731] were also acquired from Sigma. Antibodies of ve-cadhrin, p-LIMK1, LIMK1, P-MYPT1, MYPT1, P-cofilin, cofilin and beta-actin were all purchased from Cell Signaling Technology (Danvers, MA, USA).
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6

Cell-Based Assay for Endothelial Barrier

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Human lung microvascular endothelial cells (HLMVECs), THP-1 cells, MLE12 cells, and Raw 264.7 cells were purchased from American Type Culture Collection (ATCC, Manassas, VA, USA). HLMVECs were cultured with EGM-2MV microvascular endothelial growth medium containing 5% fetal bovine serum (FBS) at 37 °C in 5% CO2. LPS (E. coli O55:B5), thrombin, and the anti-β-actin antibody were purchased from Sigma–Aldrich (St. Louis, MO, USA). Antibodies against VE-cadherin, USP40, ICAM1, VCAM1, Lamin A/C, and GAPDH and immobilized protein A/G beads were purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Antibodies against pMLC, MLC, the Flag tag, the V5 tag, pLimk1, Limk1, p-cofilin 1, cofilin 1, pIκBα, p65, p-p65, HSP90β, K63-linked ubiquitin, ubiquitin, and acetylated lysine (AcK) were purchased from Cell Signaling (Beverly, MA, USA). ELISA kits for quantifying TNFα, IL-6, and IL-8 were obtained from eBioscience (San Diego, CA), and mouse IL-1β, KC/CXCL1 ELISA kits, and human recombinant TNFα protein were purchased from R&D Systems (Minneapolis, MN, USA). The anti-CD31-FITC antibody was obtained from Biolegend (San Diego, CA, USA). GeneJet™ reagent and GeneMute siRNA transfection reagent were purchased from SignaGen (Frederick, MD, USA). All materials used in the experiments were of the highest grade commercially available.
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7

Biochemical Characterization of TIPE2 Signaling

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Assays were performed as we previously described10 (link),18 (link),43 (link). The purity of BMDMs populations was greater than 95% as determined by flow cytometry after staining cells with anti-CD11b-FITC (eBioscience) and anti-F4/80-APC (eBioscience), and the viability was greater than 99% as determined by trypan blue staining. Antibodies to the following antigens were used for immunoblotting and co-immunoprecipitation: Rac1 (EMD Millipore), Rac1/2/3, RhoGDI, AKT, p-AKT (T308), p-AKT (S473), p-GSK-3β (S9), cofilin, p-cofilin (S3), p-PAK1/2 (S144/S141), p-LIMK1 (Thr508)/LIMK2 (Thr505), ERK1/2, p-ERK1/2 (T202/Y204), p-p38 (T180/Y182), mTOR, GAPDH, integrin-β1 (Cell Signaling Technology), TIPE2 (Proteintech), Flag, actin (Sigma-Aldrich,), HA (Cell Signaling Technology). Control IgG (Santa Cruz Biotechnology) anti-rabbit IgG-HRP, and anti-mouse IgG-HRP (GE Healthcare Life Sciences) were also used.
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