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7 protocols using keap1

1

Plasmid Transfection Protocols for p62 and LC3B

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BEAS‐2B cells were transfected with siRNA for nonspecific oligonucleotide control (NC) and Keap1 (Life Technologies) using HiPerfect (Qiagen) for 48 hours or 72 hours. HEK293 cells were transfected with different plasmids using Lipofectamine (Invitrogen). The following plasmids were characterized in a previous work by Lamark et al27: pDest‐EGFP‐p62 WT, pDest‐EGFP‐p62 ∆123‐170, pDest‐EGFP‐p62 ∆170‐256, pDest‐EGFP‐p62 ∆256‐370, pDest‐EGFP‐p62 ∆346‐385, pDest‐EGFP‐p62 (1‐385) that is ∆UBA (∆385‐440), pDest‐mCherry‐EGFP‐p62, pDest‐mCherry‐EGFP‐LC3B, and pDest‐EGFP‐p62 E352A (KIR point mutant). pBABE‐puro mCherry‐EGFP‐LC3B were a gift from Ana Maria Cuervo and pEGFP‐LC3B was purchased from Addgene.
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2

Quantitative Real-Time PCR Analysis

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Quantitative real-time PCR was performed as previously described (Wang et al. 2009 (link), Wu et al. 2014) (link). Primers for collagen 4 (Col4), Fn, Gapdh, Nqo1, intercellular adhesion molecule 1 (Icam-1), Ho1, iNos, Keap1, Nrf2 and Vcam-1 were all purchased from Life Technologies.
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3

Molecular Mechanisms of Cell Apoptosis

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All the chemicals were purchased from Sigma Aldrich. DMEM (Invitrogen), Whole genome expression kit (Ambion), cDNA synthesis kit (Applied Biosystem), SYBR Green (Roche), Annexin V FITC kit (Calbiochem), IPG strip, IPG buffer (GE Healthcare), Primary antibodies Caspase 9, Cyt C, Nrf2, ERK1, Phospho-ERK1, β-actin, Lamin B (all from Santacruz Biotechnology, USA), Keap1 (Thermo Scientific, USA) and Secondary antibodies (Santacruz Biotechnology, USA) were purchased. ERK1 inhibitor was purchased from Calbiochem.
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4

Quantification of Nrf2 Pathway Proteins

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Protein concentration was measured by a bicinchoninic acid (BCA) protein assay kit (Thermo Fisher Scientific, Asheville, NC, USA), according to the manufacturer’s instructions. Total protein (50 μg) underwent sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and was transferred to nitrocellulose membranes. Before incubation with specific antibodies, nonspecific binding was blocked by incubation with 5% dried skimmed milk powder. Primary antibodies used were to Nrf2, lamin B, HO-1, and β-actin (Santa Cruz Biotechnology, Dallas, TX, USA) and Keap1 (Thermo Fisher Scientific, Shanghai, China) and were incubated with the membranes at 4°C overnight. The blots were incubated with secondary horseradish peroxidase (HRP)-conjugated anti-rabbit IgG (Santa Cruz Biotechnology, Dallas, TX, USA) for 1 h at room temperature. The bands were analyzed using ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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5

Immunofluorescent Staining of iPSC-CMs

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Cells on glass coverslips were fixed with 4% paraformaldehyde (Sigma) for 20 min at 37 °C, permeabilized with 0.3% Triton X-100 (Sigma, cat#T8532), blocked with 3% bovine serum albumin (BSA; ThermoFisher, cat#15260037), and stained appropriately before finally being mounted with the Antifade mounting medium plus DAPI (Vectashield, Burlingame, CA, USA, cat#H1200). The cells were stained with the following primary antibodies overnight at 4 °C: Nrf2 (Abcam, ab137550) (1:100); Keap1 (ThermoFisher, MA5-17106) (1:100). After several washes in 0.3% triton in PBS, the cells were incubated in the dark for one hour at room temperature with secondary antibody. Secondary antibodies were as follows: Alexa Fluor 488 donkey anti-rabbit IgG and Alexa Fluor 555 donkey anti-mouse IgG (Life Technologies, 1:500). After several washes, cells were mounted before imaging. Cardiac troponin T (cTNT; Invitrogen, cat#MA5-12960) (1:100) was used to stain iPSC-CMs. Images were taken on a Nikon 55i fluorescence microscope.
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6

Mangiferin-Doxorubicin Synergistic Effects

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The reagent contained mangiferin, doxorubicin, dimethyl sulfoxide (DMSO), SDS, tris, glycine, BSA, 3-(4,5-dimethythiazol-2-yl)-2,5-diphenylTrazolium Bromide (MTT), and CelLytic (Sigma-Aldrich, St. Louis, MO, USA). Other ingredients included Dulbecco’s Modified Eagle Medium (DMEM), fetal bovine serum (FBS), antimycotic/antibiotic mixtures (Carlsbad, CA, USA), DCFH2-DA, and TUNEL staining kits (Roche, Mannheim, Germany), and antibodies were purchased from Invitrogen, Carlsbad, CA, USA. Antibodies to AKT, pPI3K, PI3K PERK1/2, ERK1/2, pP38, P38, BCL2 PARP, HO-1, NQO1, Keap-1, pNrf2, COX, TNF-α, pNFC-B, β-actin, and Lamin B1 were sourced from Invitrogen and Thermo Fisher, Waltham, MA, USA. The antibody against cleaved caspase-3 was purchased from Abcam (Branford, CT, USA).
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7

Western Blot Analysis of Cellular Proteins

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Total proteins extracted from the cells was separated by 8–12% SDS-PAGE and transferred onto nitrocellulose membranes, which were incubated with specific antibodies overnight at 4 °C, probed with HRP-conjugated secondary antibodies, and visualized using enhanced chemiluminescence reagent (Pierce). β-actin was used as the loading control. The following antibodies were used: TRIM15 (Cat: PA5-40946, Invitrogen), Keap1 (Cat: PA5-99434, Invitrogen), Nrf2 (Cat: PA5-27882, Invitrogen), anti-6x-His (Cat: MA1-21315, Invitrogen), anti-HA (Cat: 32-6700, Invitrogen), NQO1 (Cat: MA1-16672, Invitrogen), anti-K48-linkage Specific Polyubiquitin (Cat: #8081, Cell Signaling Technology), anti-K63-linkage Specific Polyubiquitin (Cat: #5621, Cell Signaling Technology).
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