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139 protocols using prohance

1

High-Resolution 3D MRI of Mouse Brains

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Mice were perfused with 30 mL of PBS supplemented with 1 μL/mL heparin (Sandoz) and 2mM ProHance (Bracco Imaging Canada) followed by 30 mL 4% paraformaldehyde supplemented with 2mM ProHance. After perfusion, mice were decapitated, and the skin, cartilaginous nose tip, and lower jaw were removed. The remaining brain and skull structures were incubated in PBS supplemented with 2 mM ProHance and 0.02% sodium azide for at least one month before MRI scanning (de Guzman et al., 2016 (link)). A multi-channel 7.0 Tesla MRI scanner (Agilent Inc., Palo Alto, CA) was used to image the brains within their skulls. Sixteen custom-built solenoid coils were used to image the brains in parallel (Nieman et al., 2018 (link)). In order to detect volumetric changes, we used the following parameters for the MRI scan: T2- weighted, 3-D fast spin-echo sequence, with a cylindrical acquisition of k-space, a TR of 350 ms, and TEs of 12 ms per echo for 6 echoes, field-of-view equaled to 20 × 20 × 25 mm3 and matrix size equaled to 504 × 504 × 630. Our parameters output an image with 0.04 mm isotropic voxels. The total imaging time was 14 hours (Spencer Noakes et al., 2017 ).
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2

Perfusion and Fixation of Mouse Brains

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In total, 47 fixed mouse brains were examined: 14 Arid1b+/− mice (7 females, 7 males) and 33 Arid1b+/+ (Wild Type, C57BL/6NCrl, 13 females and 20 males). All mice were perfused at PND60. Mice were anesthetized with a mixture of ketamine/xylazine and intracardially perfused with 30 mL of 0.1 M PBS containing 0.05 U/mL heparin (Sigma) and 2 mM ProHance (Bracco Diagnostics, a Gadolinium contrast agent) followed by 30 mL of 4% paraformaldehyde (PFA) containing 2 mM ProHance [23 (link), 24 (link)]. Perfusions were performed with a minipump at a rate of approximately 1 mL/min. After perfusion, mice were decapitated and the skin, lower jaw, ears, and the cartilaginous nose tip were removed. The brain and remaining skull structures were incubated in 4% PFA + 2 mM ProHance overnight at 4 °C then transferred to 0.1 M PBS containing 2 mM ProHance and 0.02% sodium azide for at least 1 month prior to MRI scanning [25 (link)].
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Mouse Brain Perfusion and Contrast Imaging

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Perfusions were either performed on site at the Mouse Imaging Centre (MICe) in Toronto, ON, Canada, for the Slc6a4 KO mice, or at Vanderbilt University prior to being shipped overnight to MICe. The details of the perfusion protocol have been previously discussed at length [41 (link), 42 (link)]. Briefly, mice are anesthetized with a ketamine/xylazine mix or pentobarbital and then intercardially perfused with 30 mL of 0.1 M PBS containing 10 U/mL heparin and 2 mM Prohance (Bracco Diagnostics Inc., a gadolinium contrast agent) followed by 30 mL of 4% paraformaldehyde (PFA) also containing 2 mM Prohance. After perfusion the mouse was decapitated and the skin, ears, and lower jaw were removed. The brain is left within the skull to minimize any deformations and is first incubated in the 4% PFA/Prohance solution overnight. Then, prior to scanning, the brain was incubated for an additional 7 days, at a minimum, in a solution of PBS, 2 mM Prohance, and 0.02% sodium azide, in order to equalize the contrast agent.
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Preparing Mouse Brains for MRI Imaging

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Brains left within the skull were prepared for MRI using the following method. Mice were anesthetized and intracardially perfused at a rate of 1 ml min−1, with 30 ml of 0.1 M PBS containing 10 U/100 ml heparin (Sigma-Aldrich) and 2 mM ProHance (gadolinium contrast agent, Bracco Diagnostics) followed by 30 ml of 4% paraformaldehyde (PFA) and 2 mM ProHance. After perfusion, the mice were decapitated, and the skin and the lower jaw were removed. Brains in skulls were post-fixed in 4% PFA and 2 mM ProHance at 4 °C overnight and then kept in 0.1 M PBS containing 2 mM ProHance and 0.02% sodium azide for at least 1 month before MRI scanning61 (link),62 (link).
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5

Perfusion and Fixation for MRI Imaging

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Following embryonic mock or CHIR99021 treatment, 18 week old WT and Dvl1−/− mice were anesthetized with ketamine/xylazine and intracardially perfused with 30mL of 0.1M PBS containing 10U/mL heparin (Sigma) and 2mM ProHance (a Gadolinium contrast agent, Bracco Diagnostics) followed by 30mL of 4% paraformaldehyde (PFA) containing 2mM ProHance25 (link). After perfusion, mice were decapitated and the skin, lower jaw, ears, and the cartilaginous nose tip were removed. The brain and remaining skull structures were incubated in 4% PFA + 2mM ProHance overnight at 4°C then transferred to 0.1M PBS containing 2mM ProHance and 0.02% sodium azide for at least 7 days prior to MRI scanning.
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6

Perfusion and Fixation for MRI Imaging

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Following embryonic mock or CHIR99021 treatment, 18 week old WT and Dvl1−/− mice were anesthetized with ketamine/xylazine and intracardially perfused with 30mL of 0.1M PBS containing 10U/mL heparin (Sigma) and 2mM ProHance (a Gadolinium contrast agent, Bracco Diagnostics) followed by 30mL of 4% paraformaldehyde (PFA) containing 2mM ProHance25 (link). After perfusion, mice were decapitated and the skin, lower jaw, ears, and the cartilaginous nose tip were removed. The brain and remaining skull structures were incubated in 4% PFA + 2mM ProHance overnight at 4°C then transferred to 0.1M PBS containing 2mM ProHance and 0.02% sodium azide for at least 7 days prior to MRI scanning.
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7

Perfusion-Fixed Brain Imaging Protocol

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On PND 35-36, brains were flushed via transcardial perfusion (flow rate of 2 mL/min) with 50 mL phosphate-buffered saline (PBS) containing 10 U/mL heparin and 2 mM ProHance (a gadolinium-based contrast agent; Bracco Diagnostics Inc.), fixed with 50 mL 4% paraformaldehyde (PFA) in PBS containing 2 mM ProHance, and collected for neuroimaging following previously published protocols [36 (link)]. Following perfusion, brains were incubated in the 4% PFA solution for 24 h at 4 °C then transferred to a storage PBS solution containing 0.02% sodium azide. Brains were incubated in the storage solution at 4 °C for at least 1 month prior to scanning. Images were acquired and analyzed following a protocol previously described [33 (link), 37 (link)]. Multiple comparisons were controlled for using the false discovery rate (FDR) with the significance level for the FDR-adjusted p value (q) set at q < 0.05 [38 (link)].
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8

Mouse Brain MRI Preparation Protocol

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Mice were anesthetized and intracardially perfused as previously described [44 (link)]. Briefly, following transcardial perfusion with heparin, 4% paraformaldehyde and 2 mM ProHance (Bracco Diagnostics), heads were decapitated and the skin, lower jaw, ears, and the cartilaginous nose tip were removed. The remaining skull containing the brain was soaked overnight in 4% paraformaldehyde/2 mM ProHance and then transferred to PBS, 0.02% sodium azide and 2 mM ProHance for at least 30 days prior to magnetic resonance imaging (MRI) acquisition [45 (link)].
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9

Rhesus Macaque Brain Atlas from Perfused Specimens

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The atlas was constructed based on a population of 10 young adult rhesus macaque brains. The sample population included both males (n = 7) and females (n = 3) with ages ranging from 1.8 to 11 years (average = 5.3 ± 2.8 years) and perimortem body weights ranging from 2.2 to 10 kg (average = 5.7 kg ± 2.8). Detailed information on age, weight, and gender is provided in Table 1. The brains were acquired following approved protocols from the Pathology Services and Tissue Distribution unit of the Wisconsin National Primate Research Center. All specimens were obtained at necropsy immediately following euthanasia for non-study related reasons. Brain specimens were extracted from the skull and submerged in a 500 mL solution of 10% formalin with 1% (5 mM) gadoteridol (ProHance, Bracco Imaging, Princeton, NJ) within minutes of euthanasia. After a fixation period of at least 4 weeks, brain specimens were transferred to a 500 mL solution of phosphate buffered saline with 0.5% (2.5 mM) gadoteridol for one week. Immediately prior to imaging, specimens were transferred to MRI compatible tubes and immersed in liquid fluorocarbon (Galden PFPE, Solvay, Brussels, Belgium) for susceptibility matching.
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10

Clinical Breast MRI Imaging Protocol

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MRI was performed at our institution using a standard and consistent clinical breast MRI protocol. Women were imaged in the prone position by a 1.5 T scanner (GE Signa EXCITE, GE Health, Nutley, NJ, USA) using a dedicated 7-channel surface array breast coil (InVivo, Gainesville, FL, USA). Imaging parameters were: matrix 512 × 512; slice thickness 2 mm; field of view 28–34 cm, flip angle 10°, repetition time (TR) 5.68 msec, echo time (TE) 2.736 msec. Bolus injection of the contrast agent, ProHance (Bracco Diagnostics, Princeton, NJ, USA), at 0.1 mmol/kg, 3 cc/sec was followed by a 20-cc saline flush. The first post-contrast sequence acquisition was centered at 90 seconds after contrast agent injection. A pre-contrast sequence and three sequential time point post-contrast sequences were acquired in the axial view for bilateral breasts, where each sequence took approximately 3 minutes to complete, depending on field of view sizes selected to cover the breasts. Three subtraction sequences (SUB1, SUB2, and SUB3) were generated by subtracting the pre-contrast sequence from each of the three post-contrast sequences, respectively, as part of routine post-processing with CADstream (Merge Healthcare Inc., Chicago, IL, USA).
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