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Optima grade

Manufactured by Thermo Fisher Scientific
Sourced in United States, Belgium, Canada

Optima grade is a line of high-performance laboratory equipment designed to meet the demands of research and analytical laboratories. The equipment is engineered to deliver consistent, reliable, and accurate results, ensuring the integrity of scientific data. Optima grade products are built with precision and quality in mind, offering advanced features and capabilities to support a wide range of laboratory applications.

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92 protocols using optima grade

1

Quantifying Urinary Trace Elements

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Urinary concentrations of Cr, Mn, Fe, Zn and Se were quantified using our established method (25, 26) . Briefly, 3•0 ml of urine sample was nitrified with 15 μl HNO 3 67 % v/v (Optima TM grade; Fisher) at 5°C overnight, of which 1•0 ml was diluted five times using HNO 3 1•2 % v/v (Optima TM grade; Fisher). The target analytes were then quantified using an Agilent 7700x inductively coupled plasma-MS (ICP-MS; Agilent Technologies). Standard reference materials (SRM) (2670a and 1640a) and spiked pool urine samples were used as quality controls. Detected values of Cr, Mn, Fe, Zn and Se were within the range of SRM 2670a and 1640a. The spiked recoveries of these elements ranged from 90 % to 110 %, and the within-day and between-day variations were <10 %. To control for possible contamination, a reagent blank sample (i.e. 3 ml deionised water) was processed together with every twenty samples. Analyte values in all blank samples were lower than the limits of quantification (LOQ). When the detected concentrations in urine are below LOQ, it was substituted by LOQ/(2 1/2 ). Urinary creatinine concentrations were determined using an automated clinical chemistry analyser (27) .
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2

Polymer Thin Film Fabrication and Characterization

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PSf with number-averaged molecular weight Mn = 22 kg mol−1 (Sigma-Aldrich) is dissolved in cyclohexanone (Sigma-Aldrich, puriss p.a. >99.5%). Psf films are made with a thickness of h ≈ 400 nm. These films are annealed at 220 °C for 12 h. The re-annealing after contact angle measurement is done at 220 °C for 15 min. Poly(Bisphenol-A Carbonate) (PC) with Mn = 22 kg mol−1 (Polymer Source Inc.) and polydispersity index of 1.9 is dissolved in chloroform (Fisher Scientific, Optima grade). PC films are made with a thickness of h ≈ 1200 nm. These films are annealed at 170 °C for 12 h. The re-annealing after contact angle measurement is done at 175 °C for 15 min. SIS triblock copolymer (Sigma-Aldrich) with a 14% styrene content is dissolved in toluene (Fisher Scientific, Optima grade). These films are made with a thickness of h ≈ 1300 nm and annealed at 110 °C for 10 min. Elastollan TPU 1185A (BASF) is dissolved in cyclohexanone (Sigma-Aldrich, puriss p.a. >99.5%). These films are made with a thickness of h ≈ 250 nm and annealed at 100 °C for 90 min. PVS elastomer is made by mixing base and catalyst (RTV EC00 Translucid) at a 1:1 ratio. These films are made with thicknesses on the order of several hundred microns.
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3

Trace Metal Analysis in Liver

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All laboratory-ware was soaked in 15% nitric acid solution and rinsed 5 times in ultrapure water before use, to minimize accidental metal contamination. The heat-stable protein and cytosol fractions were digested for 2 h at 80 8C with 400 mL of nitric acid (70%, v/v, Optima grade; Fisher Scientific). Once the solution had cooled, hydrogen peroxide was added (160 mL; 30%, v/v, Optima grade; Fisher Scientific). Digested samples were diluted with ultrapure water, and the total metal concentrations were determined in the whole cytosol and in the heatstable protein supernatants by ICP-MS ( 59 Co, 60 Ni, 65 Cu, 109 Ag, 111 Cd, 205 Tl). These concentrations are expressed as the total metal burden in the whole cytosol and in the heat-stable protein fractions (nanomoles) divided by the total liver dry weight (grams, estimated as 20% of the wet wt). The 20% dry weight value is based on independent measures performed on yellow perch liver samples (A. Caron and Q2 Amyot, INRS-ETE, Quebec, QC, Canada, unpublished data) and is similar to the value found by Gigu ere et al. [6] .
Recoveries (mean AE standard deviation [SD], n ¼ 5) of the trace elements studied from the certified reference material lobster hepatopancreas (TORT-
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4

Urinary Metal Profile Assessment

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Urinary metals/metalloids were detected with the Octagon-based Collision/Reaction Cell (Agilent Technologies) and Agilent 7700X Inductively Coupled Plasma Mass Spectrometer (ICP‒MS).
Morning urine samples of subjects were collected in a microelement-free container and stored at − 20 °C. Samples were pretreated according to the following steps. Then, 500 μL urine was added to 20 μL of 67% (Vol/Vol) HNO3 (OptimaTM grade; Fisher Scientific) before being placed into a refrigerator overnight for digestion. Then, 0.5 ml of each sample was mixed and diluted tenfold with 1% (Vol/Vol) HNO3. A total of 21 metal concentrations were finally determined: aluminum (Al), zinc (Zn), argentum (Ag), As, barium (Ba), Cd, copper (Cu), iron (Fe), Hg, cobalt (Co), chromium (Cr), cesium (Cs), Mn, Se, strontium (Sr), nickel (Ni), Pb, rubidium (Rb), thallium (Tl), uranium (U), and vanadium (V). Instrument performance was verified each time by applying standard reference materials (SRMs) 1640A (National Institute of Standards and Technology, Gaithersburg, MD, USA) and a blank control (1% HNO3). The spiked recoveries of quality control standards ranged from 85 to 120%, and the limits of detection (LODs) varied between 0.00004 μg/L and 0.25 μg/L. Moreover, we used a fully automatic biochemical analyzer (Mindray Medical International Ltd.) to detect the urinary specific gravity (SG) of each sample.
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5

Determination of Urinary Metal Content

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The determination of metal contents in urine was performed as previously described [37 (link)], with minor modification. In brief, the frozen urine samples were completely thawed at room temperature and homogenized. A 3.0 ml aliquot of urine was transferred to a polypropylene tube (Jiayu experiment instrument Co., Ltd., Haimen, China) containing 15.0 μl of 67% (v/v) HNO3 and stored in a refrigerator at 5°C. Two hours before sample preparation the urine samples were brought to room temperature. A 1.0 ml of the sample was pipetted into a 10ml disposable polypropylene tube and then filled up to 5.0 ml with 1.2% (v/v) HNO3 (OptimaTM grade, Fisher, Belgium) using adjustable volume pipette samplers. The samples were then measured using an inductively coupled plasma mass spectrometry with an octopole based collision/reaction cell (Agilent 7700 Series, Waldbronn, USA).
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6

Comprehensive Metabolite Profiling Protocol

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Fisher OptimaTM grade (Fisher Scientific, Hanover Park, IL, USA) solvents were used for sample preparation. Internal standards were obtained from Cambridge Isotope Laboratories, Inc. (Andover, MA, USA) (citric acid-d4, dl-glutamic acid-d5, d-sorbitol-13C1, and l-leucine-d3) or Sigma-Aldrich (St. Louis, MO, USA) (4-nitrobenzoic acid). Standards for obtaining retention indices (C4–C24 FAMEs, methyl nonanoate, and alkane standard mix (C10–C40)) and for urine pretreatment (urease from Canavalia ensiformis (Jack bean) type III) were obtained from Sigma-Aldrich. Derivatization chemicals were obtained from Thermo Scientific (Waltham, MA, USA) (Methoxamine (MOX) reagent and N-methyl-N-[trimethylsilyl]trifluoroacetamide (MSTFA) with 1% (v/v) trimethylchlorosilane (TMCS)).
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7

Reagents for Metabolomics Analysis

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The deionized water was prepared using a Direct Q 3UV purification system (Merck). Methanol and acetonitrile (Optima grade) were obtained from Thermo Fisher Scientific, ammonium carbonate; 25% ammonia solution, 4-fluorophenylalanine, 1C6-glucose-6-phosphate, and 2-dipalmitoyl-sn-glycero-3-O-4′-[N,N,N-trimethyl(d9)]-homoserine (d9-DGTS) from Merck; and hexakis(2,2-difluoroethoxy)phosphazene and tris(trifluoromethyl)-1,3,5-triazene from Apollo Scientific.
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8

Nanoscale Liquid Chromatography-MS/MS Analysis

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One microliter of digested peptides (1 μg·μl−1) was injected to a custom packed AQUA 5 μm, 125 Å, C18 (Phenomenex, cat no. 04A-4299) 20 cm, 15 ± 1 μm, PicoFrit Emitter (New Objective) equilibrated with optima grade (ThermoFisher Scientific) 5% solvent B (90% acetonitrile, 0.1% formic acid) and 95% solvent A (0.1% formic acid). Detailed eluting parameters are described in Supplementary Information. The mass spectrometer was equipped with a NanoSprayFlex ion source (ThermoFisher Scientific). Peptides were analyzed in top 10 data dependent MS2 acquisition by a Q-Exactive Plus Hybrid Quadrupole-Orbitrap mass spectrometer (ThermoFisher Scientific). Full scan parameters were set to 70,000 resolution, 3e6 AGC target, with a scan range of 350–1600 m/z. MS2 parameters were set to 17,500 resolution, 1e5 AGC target, isolation window at 3.0 m/z, (N) CE: 30, charge exclusion: unassigned, 1, > 8.
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9

Quantifying Hepatic and Skeletal Muscle Iron

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Hepatic and skeletal muscle iron pool has been quantified on the ‘Analyse Elémentaire et Métabolisme des Métaux’ (AEM2) Platform (Université de Rennes 1—Centre Hospitalier Universitaire). Frozen skeletal muscle and liver samples were desiccated at 120°C for 15 h in an overnight. They were weighed and mineralized according to a previous protocol.26 Briefly, nitric acid solution (Optima Grade, Thermo Fisher Scientific, Waltham, MA, USA) was added to dried samples, and then the tubes were placed in a MARS6 microwave (CEM, Matthews, NC, USA) with a temperature maintained at 180°C. Iron (56Fe) was quantified by inductively coupled plasma mass spectrometry on an X‐Series IO from Thermo Fisher Scientific equipped with collision cell technology (ÆM2 platform). Calibration ranges were prepared using a multi‐element calibrator solution (Plasma Cal, SCP SCIENCE, Baie‐D'Urfe, QC, Canada).
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10

Culturing Cryptosporidium parvum Oocysts

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Freshly passaged C. parvum oocysts were purchased from Bunch Grass Farm (Deary, ID) and handled under BSL-2 protocols, with the approval of the Boston University Institutional Biosafety Committee. All reagents and chemicals were purchased from Sigma-Aldrich (St. Louis, MO), unless noted otherwise. Solvents used for LC-MS were Optima™ grade, procured from Fisher Scientific (Thermo-Fisher Scientific, Waltham, MA).
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