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7 protocols using m3 84

1

Quantifying Spinal Cord Pathology in EAE Mice

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Spinal cords and spleens of EAE mice were removed following perfusion with 4% (wt/vol) PFA and post-fixed for 2–3 h. After embedding in paraffin, 4 μm thin sections were prepared by using a microtome. For immunohistochemistry, αCD3 (1:200, MCA1477, Bio-Rad) and αMac-3 (1:200, M3/84, BD Pharmingen) antibodies were used to detect immune cells. Luxol Fast Blue staining was performed for evaluation of demyelination and Bielschowksy silver impregnation for axonal integrity/damage. Quantification of axonal preservation, cellular infiltrates, and degree of demyelination was performed in a blinded fashion on 9 independent spinal cord sections per mouse. Cellular infiltrates were quantified per square millimeter of white matter by overlaying a stereological grid onto sections and demyelinated areas were determined semi-automatically by CellP Software (Olympus). Six visual fields of the cervical, thoracic, and lumbar spinal cord were used for quantification of axonal preservation counted on a 100 μm diameter grid.
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2

Immunohistochemical Analysis of Adipose Tissue

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Mouse EAT was obtained and fixed in 4% (wt/vol) paraformaldehyde in PBS for 3h and subsequently transferred to 30% (wt/vol) sucrose overnight. The samples were then embedded in paraffin and serially sectioned (6 μm). Cross-sections were prepared for immunohistochemical staining overnight at 4 °C with a 1:100 dilution of a mouse mAb to Mac3 (M3/84; BD Biosciences), 1:400 dilution of a rat anti-mouse CD11c (GB11059, Servicebio), and 1:2000 dilution of a rat anti-mouse CD206 (GB13438, Servicebio). Immune complexes were detected with biotinylated secondary antibodies (BD Biosciences), HRP-conjugated streptavidin (Dako), and the peroxidase substrate diaminobenzidine (Dako). Images were captured using a microscope (Leica, Germany). Macrophage in EAT was quantitated by calculating the ratio of nuclei of Mac3-positive cells to total nuclei in 10 fields of 3 slides for each individual mice using 6 mice for each group [22 (link)]. The CD11c and CD206 staining level were validated quantitatively by image analysis assessing the pixel values on the digital slide images. In some experiments, cross-sections were stained with hematoxylin-eosin (HE). For quantification of adipocyte area, 5–6 fields per section were averaged and 6 mice per group were calculated. Image J software (NIH, USA) was used to measure adipocyte area and shown as the average adipocyte area (in μm2).
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3

Immunohistochemical Detection of Viral and Cellular Markers in CNS Tissue

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For detection of VV-infected cells or macrophages, paraformaldehyde (PFA) (4%) fixed and paraffin embedded CNS tissue sections were incubated with Bond Primary Antibody Diluent (Leica) containing either polyclonal rabbit anti-VV serum (1:1000; Quartett Immunodiagnostika & Vertriebs-GmbH, Berlin) or monoclonal antibodies against Mac-3 (1:750; M3/84) purchased from BD Pharmingen. IHC staining was performed on an automated Leica BOND-MAX instrument using Bond Polymer Refine Detection Solution for DAB. For detection of GFAP, PFA-fixed and paraffin-embedded CNS sections were incubated with Dako polyclonal rabbit anti-GFAP antibodies (Z0034; 1:13000) in Ventana buffer and staining was performed on a Ventana NexES IHC Slide Stainer using iVIEW DAB Detection Kit (Ventana). Images were taken using the Leica SCN400 slide scanner analysis software or were acquired on an Olympus BX53 Microscope (DP72 camera) using the cellSens 1.8 digital imaging software (Olympus).
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4

Histopathological Analysis of Neuroinflammation

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The cerebellum and spinal cord were collected and fixed in 4% paraformaldehyde and embedded in paraffin. Inflammation was graded on 4 µm thick H&E‐stained sections. Per mouse, between four and six sections of the spinal cord were analyzed. Immunohistochemistry was performed for CD45 (30‐F11, 1:5000; BD, Breda, the Netherlands), mac‐3 (M3/84, 1:30; BD), CD3 (CD3‐12, 1:100; AbD Serotec, Puchheim, Germany) and FoxP3 (1:50, FJK‐16s; eBioscience, San Diego, CA, USA). The spinal cord and cerebellum were stained with luxol fast blue (0.1% LFB; Sigma Aldrich, Saint Louis, MO, USA) for observation of myelin loss. All stained sections were analyzed by an observer who was blinded to the experimental conditions.
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5

Quantifying Macrophages and Adipocytes in Mouse Epicardial Adipose Tissue

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Mouse eAT was isolated, fixed, and embedded in paraffin, and serially sectioned (6 µm). Cross-sections were prepared for immunohistochemistry by incubating overnight at 4 °C with a 1:100 dilution of an antibody to mouse Mac3 (M3/84; BD Biosciences). Immune complexes were detected using biotinylated secondary antibodies (BD Biosciences), HRP-conjugated streptavidin (Dako, California, USA), and the peroxidase substrate diaminobenzidine (Dako). Images were captured using a microscope (Leica, Wetzlar, Germany). Macrophages in eAT were quantified by calculating the ratio of nuclei of Mac3-positive cells to total nuclei in 10 fields of 3 slides for each individual mouse using 6 mice for each group [27 (link)]. For quantifying adipocyte area, 5–6 fields per section were averaged with 6 mice per group being studied. Image J software (NIH, Maryland, USA) was used to measure adipocyte area, and the data are shown as the average cell area (in μm2).
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6

Immunofluorescence Imaging of Lung Tissues and Cells

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Lungs were fixed in 4% paraformaldehyde (PFA) phosphate buffer solution. Fixed tissues were embedded in OCT compound (Sakura Finetek, Tokyo, Japan), frozen by liquid N2 and stored at −80 °C. Cryostat 6-μm sections were treated for 30 min with PBS containing 1% BSA (PBS-BSA) to block nonspecific binding, and then incubated with phycoerythrin (PE)-Mac3 (M3/84, BD Biosciences, San Jose, CA). To examine the cytology of the MDCK cells, we infected them with Color-flu virus and then fixed them in 4% PFA phosphate buffer solution. Nuclei were stained with Hoechst33342 (Invitrogen, Carlsbad, CA). Sections and cells were visualized by using a confocal microscope (Nikon A1Rsi, Nikon, Tokyo, Japan), controlled by NIS-Elements software. For quantitative multi-colour imaging analysis, the slides were visualized by use of an inverted fluorescence microscope (Nikon Eclipse TS100) with a Nuance FX multispectral imaging system with inForm software (PerkinElmer, Waltham, MA).
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7

Immunofluorescence and Immunohistochemistry of Tissue Sections

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Samples were cut into 7 μm thin slices, and cryo-sections were fixed in acetone. After blocking in 4% appropriate serum, sections were incubated with primary antibodies (Mac3 (1:200, M3/84, BD Pharmingen), PARP14 (1:50, HPA01206, Sigma-Aldrich), PARP9 (1:100, ab53796, Abcam) and human CD68 (1:200, M0876, Dako), followed by biotin-labelled secondary antibody (1:250, Vector Laboratories, Burlingame, CA, USA) and streptavidin-coupled Alexa Fluor 488 antibody (Life Technologies). For immunofluorescence double labelling, after avidin/biotin blocking (Vector Laboratories), the second primary antibody was applied overnight at 4 °C, followed by biotin-labelled secondary antibody and streptavidin-coupled Alexa Fluor 594 antibody (1:250, Life Technologies). Sections were washed in PBS and embedded in mounting medium containing 4,6-diamidino-2-phenylindole (Vector Laboratories). For bright-field immunohistochemistry on tissue sections, following the first biotin-labelled secondary antibody incubation, sections were incubated with streptavidin-labelled horseradish peroxidase (HRP) solution (Dako), followed by 3-amino-9-ethylcarbazole (AEC) solution. Slides were examined using the Eclipse 80i microscope (Nikon, Melville, NY, USA) or the confocal microscope A1 (Nikon). All images were processed with the Elements 3.20 software (Nikon).
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