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19 protocols using ck666

1

Embryonic Cell Division Regulation

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Embryos were exposed to 0.1% Dimethyl Sulfoxide (DMSO) or drug inhibitor after second meiosis and then incubated until the two or four cell stage. To inhibit branched actin polymerization by the Arp2/3 complex cells were incubated in the presence of 100 μM CK 666 (Tocris, 3950), based on previously reported conditions for using CK666 in sea star oocytes and sea urchin coelomocytes (Henson et al., 2015 (link); Mori et al., 2014 (link)). To inhibit Aurora B kinase activity, embryos were incubated in a range of doses between 20-100 μM ZM447439 (Tocris, 2458), and 50 μM ZM 447439 was found to be the lowest dose that reduced Histone H3 phosphorylation and blocked cytokinesis (Fig. S1). To rapidly depolymerize microtubules 20 μM Nocodazole (Selleckchem, S2775) was added for two minutes prior to fixation (Foe and von Dassow, 2008 (link)).
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2

Targeted Inhibition of Actin Dynamics in Lateral Amygdala

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The stylus was removed from the guide cannula, and a 28 gauge injection cannula, extending 1.5 mm from the tip of the guide cannula aimed to the LA, was carefully placed. The injection cannula was connected via PE20 tubing and back-filled with saline with a small air bubble separating the saline from the drug solution, to a 10-μl Hamilton microsyringe, driven by a microinjection pump (PHD 2000, Harvard Apparatus, Cambridge, MA). Solution was injected at a rate of 0.5 μl/min. Total volume injected was 0.5 μl per LA. CK-666 (100 µm; Tocris Bioscience, Bristol, UK), control compound CK-689 (100 µm; Merck Millipore, Billerica, MA) or SMIFH2 (100 µm; Tocris) were dissolved in vehicle (1:1 saline and DMSO). YGRKKRRQRRRGGPPPPPGPPPPPGPPPPP-Lys(biotyn)-NH2-OH [TAT-G(GP5)3] or control peptide [YGRKKRRQRRRGGAAAAAGAAAAAGAAAAA-Lys(biotyn)-NH2-OH; TAT-G(GA5)3] (GL Biochem, Shanghai, China) were first dissolved in DMSO and then diluted with saline, to 30 µg/µl. After injection, the injection cannula was left for an additional 1 min before withdrawal to minimize dragging of injected liquid along the injection track.
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3

Imaging and Immunoblotting of Nuclear Proteins

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For imaging the nucleus, cells were incubated with 200 ng ml−1 of Hoechst 33342 (Life Technologies) or 34580 (Invitrogen) for 30 min at 37 °C and 5% CO2.
The following antibodies were used for immunoblotting: LmnA/C (H110, Santa Cruz), anti-ArpC4 and anti-sun2 (Abcam), and anti-actin (Millipore). Antibodies were used at 1:1,000 dilution.
For immunofluorescence, we used Alexa Fluor 594-coupled phalloidin (Invitrogen; 1:400), anti-LmnAC (N18, Santa Cruz (1:50) and clone 4C11 from Sigma Aldrich (1:2,000)), anti-Lamin B1 (ab16048, Abcam (1:500)) and anti-Arp3 (Abcam; 1:200); DAPI (4,6-diamidino-2-phenylindole) for DNA staining; and secondary antibodies anti-mouse-Alexa488 and anti-Goat-Alexa488 from Jackson ImmunoResearch Laboratories were used at 1:400. Slides were mounted with custom-made Moviol.
For lymphatic vessels visualization, anti-LYVE-1 (R&D System, 1/1,000) was used.
For drug treatment CK666, latrunculin A and blebbistatin were obtained from Tocris Bioscience, Y27632 from Calbiochem, nocodazole and DMSO from Sigma-Aldrich. For silencing, Smart pool ON-TARGETplus mouse LMNA siRNA, Arpc4 siRNA and Sun1 siRNA were purchased from Thermo Fisher Scientific. Micro-channels were coated with fibronectin (Sigma) or custom-made pLL(20)-g[3.5]-PEG(2)-Rhodamin.
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4

Recombinant Lack antigen purification

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The Lack antigen was produced and purified by the ‘Recombinant Protein' platform (UMR144, Institut Curie, Paris, France), and Lack peptide (aa 156–173) was synthetized by PolyPeptide Group. Cytochalasin D and nocodazole used from centrosome purification were from Sigma Aldrich. For inhibition of Arp2/3 activity, cells were pretreated with 25 μM CK666 (Tocris Bioscience) for 30 min before being stimulated for indicated time in presence of the drug.
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5

Inhibitors of Actin Dynamics in Cell Biology

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All ligands, chemical compounds, and inhibitors used in this manuscript were cell biological grade: EGF (Sigma-Aldrich, cat# E9644), NH4Cl (Sigma-Aldrich, cat# A0171), NSC23766 (TOCRIS, cat# 2161), Casin (TOCRIS, cat# 5050), ZCL278 (TOCRIS, cat# 4794), ML141 (TOCRIS, cat# 4266), PBP10 (Calbiochem, cat# 529625), Rapamycin (Sigma-Aldrich, cat# S-015), U0126 (Sigma-Aldrich, cat# 19–147), Quercetagetin (Calbiochem, cat# 551590), Afatinib (Selleckchem, cat# S1011), 5-(N,N-Dimethyl)-amiloride hydrochloride (DMA, Sigma-Aldrich, cat# A4562), 5-(N-ethyl-N-isopropyl)-amiloride (EIPA, Cayman Chemical Company, cat# 14406), Wiskostatin (TOCRIS, cat# 4434), 187-1, N-WASP inhibitor (TOCRIS, cat# 2067), CK869 (TOCRIS, cat# 4984), CK666 (TOCRIS, cat# 3950), Cytochalasin D (TOCRIS, cat# 1233), and LY294002 (Sigma-Aldrich, cat# L9908).
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6

Cytoskeleton Manipulation Protocols

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Unless otherwise specified, all chemicals and reagents were purchased from Sigma. C3 transferase was obtained from Cytoskeleton (#CT03), The Arp2/3 inhibitor CK-666 was purchased from Tocris (#3950), resuspended in Dimethyl Sulfoxide at a stock concentration of 100 mM, and aliquoted stocks stored at −80°C.
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7

Immunofluorescence Staining of Actin Regulators

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Primary antibodies used were rabbit anti-mDia1 polyclonal (LifeSpan BioSciences, Seattle, WA), rabbit anti-mDia3 polyclonal (SIGMA-Aldrich, St. Louis, MO), chicken anti-vimentin polyclonal (Millipore, Burlington, MA), rabbit anti-GFP polyclonal (MBL, Nagoya, Japan), goat anti-nectin-2 polyclonal (Santa Cruz Biotechnology, Dallas, TX), rabbit anti-espin1 polyclonal (#PB538, a gift from Dr. Bechara Kachar, NIH) [49 (link)], mouse anti-espin1 monoclonal, mouse anti-N-cadherin monoclonal (BD Bioscience, San Jose, CA), and mouse anti-phospho-myosin light chain2 (Ser19) monoclonal (Cell Signaling, Danvers, MA). Inhibitors used were SMIFH2 (Tocris, Bristol, United Kingdom) and CK-666 (Tocris, Bristol, UK).
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8

Antibody-based detection of cytoskeletal proteins

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Primary antibodies against following proteins were used: Coro1 (ab56820 and ab72212), β-actin (ab20272) from Abcam (Cambridge, UK); Coro3 (K6-444 hybridoma supernatant) [42 (link)]; β3-integrin (HC93 sc-14009) and Gαs (sc-823) from Santa Cruz Biotechnology (Heidelberg, Germany); phosphor-VASP(Ser157) (#3111) from Cell Signaling Technology (Leiden, The Netherlands); GAPDH (6C5-CB1001) from Calbiochem/Merck (Watford, UK); p34-Arc/ARPC2 (07-227) from Millipore/Merck. Secondary antibodies Alexa Fluor 568-conjugated anti-rat or anti-rabbit immunoglobulins (Molecular Probes, Thermo Fisher Scientific, Altrincham, UK) were used for immunofluorescence. IRDye 680 or IRDye 800 anti-mouse and anti-rabbit immunoglobulins (LI-COR Biosciences, Lincoln, NE, USA) were used for Western blot. Human fibrinogen was from Enzyme Research (Swansea, UK), collagen (Kollagenreagens Horm) was from Takeda (Osaka, Japan), and PGI2 was from Cayman Chemical (Ann Arbor, MI, USA). Phosflow Lyse/Fix Buffer and P-selectin were from BD Biosciences (Oxford, UK). Gly-Phe-Hyp-Gly-Glu-Arg (GFOGER) and collagen-related peptide (CRP) were from Cambridge University (Cambridge, UK). U46619 was from Enzo (Exeter, UK). CK666 was from Tocris Bioscience (Abingdon, UK). Thrombin, ADP and FITC, or TRITC-conjugated phalloidin were from Merck (Dorset, UK). Other reagents were from Merck unless otherwise indicated.
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9

Micropillar Perturbant Delivery Protocol

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Chemical perturbants were acquired from Sigma-Aldrich, except SMHIF2 (Merck), calpeptin (Cytoskeleton), IPA3 and CK666 (Tocris). Perturbants were used at the indicated concentrations. A microsyringe (Hamilton) was used to inject the perturbants into the Petri dish containing the micropillar substrates. Supplementary Table 1 lists the perturbants used, how they were applied (preincubated or added after nuclear envelope breakdown) and a short description of their action.
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10

Chemical Perturbations of Fibroblast Mechanics

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For chemical perturbations, suspended fibroblasts were pre-incubated with the inhibitors: SMIFH2 (20 μM, Merck Millipore, Billerica, MA), Y27632 (10 μM, Sigma-Aldrich), H1152 (1.6 nM, Merck Millipore), CK666 (200 μM, Tocris Bioscience, Bristol, UK), CK869 (200 μM, Tocris Bioscience, Bristol, UK), C8 inhibitor50 (1 μM, kind gift of William deGrado, UCSF), blebbistatin (20 μM, Sigma-Aldrich), ML-7 (50 μM, Tocris Bioscience, Bristol, UK) and STC (2 μM, Sigma-Aldrich) for 30 min in SCFS media at 37 °C. To inhibit RhoA, fibroblasts were incubated with C3 toxin (2 μg ml–1, Cytoskeleton, Denver, USA) or Y12 (30 μM, Merck Millipore) for 2 or 3 h, respectively, before the experiments. All reagents were dissolved in dimethylsulphoxide (DMSO) except cell permeable C3 toxin, which was dissolved in 50% (v/v) glycerol. As control we used 0.1% (v/v) DMSO. To block β1-integrins, trypsinised fibroblasts were incubated with α5β1 blocking antibody MAB2575 (Millipore, USA) for 30 min, before the experiments. To block β3-integrins, trypsinised fibroblasts were incubated with 1 μM cilengitide (Selleck Chemicals, Houston, TX, USA) for 30 min, before the experiments. SCFS was conducted in the presence of the respective drug/antibody in the stated concentrations.
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