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Myc sirna

Manufactured by Santa Cruz Biotechnology
Sourced in United States

MYC siRNA is a small interfering RNA (siRNA) designed to target and silence the expression of the MYC gene. The MYC gene is a crucial regulator of cell growth and proliferation, and its dysregulation is associated with various types of cancer. The MYC siRNA product can be used in research applications to study the role of the MYC gene and its potential as a therapeutic target.

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6 protocols using myc sirna

1

Evaluating MYC Regulation in Cell Lines

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HeLa cells and MDA-MB-231 cells (whether unmodified or CRISPR-modified cell lines), grown to around 30% or 50% confluency in 12-well plates, respectively, were treated with vehicle (DMSO; 0.1% (v/v), the final concentration in all compound-treated samples) or compound of interest in growth medium for 24 h. After 24 h, the medium was removed, and the cells were treated with fresh medium containing compound for additional 24 h. For MYC siRNA studies, cells were seeded in 12-well plates and 1 nM of MYC siRNA (SantaCruz, sc-29226) or scrambled control (SantaCruz, sc-37007) was transfected with Lipofectamine 3000 according to the manufacturer’s recommended protocol. Namalwa (0.4 × 106 cells per ml, 2 ml), HL-60 (0.5 × 106 cells per ml, 2 ml) and Raji (0.7 × 106 cells per ml, 2 ml) cells were treated with vehicle, MYC-RIBOTAC or MYC-Ctr for 48 h. For Namalwa, HL-60 and Raji cells, RNase L mRNA levels were also measured using RT–qPCR. For studies performed in MCF-10a and MDA-MB-231 cells, TaqMan assays were also performed using the TaqMan gene expression assay (GAPDH: Hs03929097_g1, 4331182; MYC: Hs00153408_m1, 4331182) and the TaqMan Fast Advanced MasterMix.
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2

Versatile Toolkit for IGF2BP Functional Studies

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pcDNA3-based vectors encoding wild-type and KH domain mutant FLAG-tagged chicken ZBP1 (refer to as IGF2BP1), human IGF2BP2 and IGF2BP3 were kindly provided by Dr. Hüttelmaier (Martin-Luther-University, Germany). RRM domain truncation of IGF2BP2 (IGF2BP2-ΔRRM) was produced by PCR using the Q5 Site Directed Mutagenesis Kit (NEB) with Forward primer 5′-GAAGAGGTGAGCTCCCCT-3′ and Reverse primer 5′-GAATTCCTTGTCGTCGTCC-3′. The plasmid encoding human MYC (pCDNA3-HA-HA-humanCMYC) was obtained from Addgene. The TRC lentiviral vectors encoding shRNAs against IGF2BP1 (TRCN0000075149 and TRCN0000075152), IGF2BP2 (TRCN0000149002 and TRCN0000148565), IGF2BP3(TRCN0000074677 and TRCN0000074673), METTL3 (TRCN0000034715) and METTL14 (TRCN0000015933) and their non-specific control (shNS, RHS6848) were purchased from GE Dharmacon (Lafayette, CO), while the packing vectors, pMD2.G, pMDLg/pRRE and pRSV-Rev were obtained from Addgene. The MYC siRNA was purchased from Santa Cruz Biotechnology (Santa Cruz, CA), while the HuR siRNA was from GE Dharmacon.
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3

Versatile Toolkit for IGF2BP Functional Studies

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pcDNA3-based vectors encoding wild-type and KH domain mutant FLAG-tagged chicken ZBP1 (refer to as IGF2BP1), human IGF2BP2 and IGF2BP3 were kindly provided by Dr. Hüttelmaier (Martin-Luther-University, Germany). RRM domain truncation of IGF2BP2 (IGF2BP2-ΔRRM) was produced by PCR using the Q5 Site Directed Mutagenesis Kit (NEB) with Forward primer 5′-GAAGAGGTGAGCTCCCCT-3′ and Reverse primer 5′-GAATTCCTTGTCGTCGTCC-3′. The plasmid encoding human MYC (pCDNA3-HA-HA-humanCMYC) was obtained from Addgene. The TRC lentiviral vectors encoding shRNAs against IGF2BP1 (TRCN0000075149 and TRCN0000075152), IGF2BP2 (TRCN0000149002 and TRCN0000148565), IGF2BP3(TRCN0000074677 and TRCN0000074673), METTL3 (TRCN0000034715) and METTL14 (TRCN0000015933) and their non-specific control (shNS, RHS6848) were purchased from GE Dharmacon (Lafayette, CO), while the packing vectors, pMD2.G, pMDLg/pRRE and pRSV-Rev were obtained from Addgene. The MYC siRNA was purchased from Santa Cruz Biotechnology (Santa Cruz, CA), while the HuR siRNA was from GE Dharmacon.
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4

Modulating MYC and RAD17 in Cells

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Control siRNA A (Santa Cruz Biotechnology #sc 37007), RAD17 siRNA (Santa Cruz Biotechnology # sc 36358) or MYC siRNA (Santa Cruz Biotechnology #sc-29226) was transfected into cells using DharmaFECT 3 (Dharmacon #T-2003-01).
pcDNA3-EV, pcDNA3-MYC (from the Jianjun Chen lab in the Department of Systems Biology at the Beckman Research Institute of City of Hope) and pCMV6-RAD17 (ORIGENE CAT#: RC215866) constructs were transfected into the cells using Lipofectamine 2000 (ThermoFisher Scientific Invitrogen #11668030).
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5

Culturing Human Pancreatic Cancer Cell Lines

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Human pancreatic cancer cell lines, including PANC-1, SW1990, CFPAC-1, BxPC-3, HPAC, MIAPaCa-2, and Capan-1, were purchased from the American Type Culture Collection (Manassas, VA, USA) and maintained in DMEM (Gibco, Grand Island, NY, USA) supplemented with 10 % fetal bovine serum (FBS), 100 units/ml penicillin, and 100 mg/ml streptomycin (Gibco). The cultures were incubated at 37 °C in a humidified atmosphere with 5 % CO2. Cells were passaged every 2–3 days to support exponential growth. SATB1, MMP2, MMP9, MYC and β-actin antibodies, SATB1 siRNA, and MYC siRNA were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Horseradish peroxidase (HRP)-conjugated mouse and goat secondary antibodies were purchased from Genscript (Nanjing, China).
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6

Evaluating Oncogene Knockdown Effects

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Cells (5,000) were plated in 96-well plates in triplicate and transfected on Day 0 using RNAiMax with 10 nM of Control adaptor, U1 KRAS1B, U1 KRAS1B mutant, U1 MYC2, U1 MYC3, MYC siRNA (Santa Cruz), or KRAS siRNA SMARTpool (Dharmacon). On Day 3, cells were harvested for viability using the ViaCount reagent on the Guava (Millipore)or with CCK-SK (Dojindo) reagent according to manufacturer’s protocol. For unharvested cells, the old medium was replaced and transfected again. The experiment was completed after 3 treatments.
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